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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS13495 and DDA3937_RS13500 are separated by 70 nucleotides
DDA3937_RS13500 and DDA3937_RS13505 overlap by 1 nucleotides
DDA3937_RS13505 and DDA3937_RS13510 overlap by 8 nucleotides
DDA3937_RS13510 and DDA3937_RS13515 are separated by 226 nucleotides
DDA3937_RS13495: DDA3937_RS13495 - flagellar export chaperone FlgN, at 3,074,589 to 3,075,026
_RS13495
DDA3937_RS13500: DDA3937_RS13500 - flagellar protein FlhE, at 3,075,097 to 3,075,519
_RS13500
DDA3937_RS13505: DDA3937_RS13505 - flagellar biosynthesis protein FlhA, at 3,075,519 to 3,077,606
_RS13505
DDA3937_RS13510: DDA3937_RS13510 - flagellar type III secretion system protein FlhB, at 3,077,599 to 3,078,750
_RS13510
DDA3937_RS13515: DDA3937_RS13515 - protein phosphatase CheZ, at 3,078,977 to 3,079,621
_RS13515
Group
Condition
DDA3937
_RS13495
DDA3937
_RS13500
DDA3937
_RS13505
DDA3937
_RS13510
DDA3937
_RS13515
plant
Stem-Atlantic
-4.5
-0.7
-4.2
-4.3
-3.9
plant
Stem-Atlantic
-3.9
-0.6
-4.7
-3.8
-4.5
plant
Stem-Atlantic
-5.2
-1.8
-4.0
-3.0
-2.8
plant
Stem-Norland
-5.8
-1.2
-2.7
-2.9
-3.8
plant
Stem-Norland
-3.8
-0.9
-3.8
-3.7
-2.9
plant
Stem-Atlantic
-4.4
+0.1
-3.5
-3.3
-3.7
plant
Stem-Norland
-2.6
-1.0
-3.2
-3.3
-4.2
plant
Stem-Norland
-3.2
-0.3
-3.9
-3.6
-3.0
plant
Stem-Norland
-3.9
-1.0
-2.4
-2.0
-3.1
plant
Stem-Atlantic
-2.7
-0.7
-2.6
-2.6
-3.2
plant
Upstate
-0.1
-0.6
-0.8
-0.8
-2.9
control
LB
-1.4
-0.5
-0.9
-1.0
-0.0
control
PDB
-3.9
+0.2
+0.4
+0.1
-0.7
plant
Norland
-0.7
+0.0
-0.6
-0.8
-1.2
plant
Norland
-0.3
-0.5
-0.7
-0.7
-1.2
control
LB
-1.2
-0.3
-0.9
-0.8
-0.1
plant
Upstate
-0.0
-0.4
+0.3
+0.2
-2.3
plant
Atlantic
+1.1
-0.8
+0.3
+0.2
-1.0
carbon source
M9+glucose
-0.8
-0.4
+1.9
+1.8
+0.2
carbon source
M9+glucose+arginine
-0.3
-0.8
+2.0
+1.9
-0.0
carbon source
M9+glucose+arginine
-0.2
-0.7
+2.1
+2.0
-0.1
carbon source
M9+glucose+arginine
+0.1
-0.8
+2.1
+2.1
+0.3
carbon source
M9+glucose
-0.3
-0.4
+2.1
+2.1
+0.4
carbon source
M9+glucose
-0.3
-0.5
+2.5
+2.4
+0.2
carbon source
M9+glycerol
+3.3
-0.5
+2.8
+2.8
-0.3
carbon source
M9+glycerol
+2.3
-0.4
+3.2
+3.2
+0.4
carbon source
M9+glycerol
+4.1
-0.7
+3.4
+3.4
-0.2
carbon source
M9+glycerol
+4.0
-0.3
+3.6
+3.2
-0.3
carbon source
M9+glycerol
+3.7
-0.0
+3.1
+3.3
+0.5
carbon source
M9+glycerol
+4.7
-0.3
+3.6
+3.7
+0.3
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