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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS13395 and DDA3937_RS13400 are separated by 5 nucleotides
DDA3937_RS13400 and DDA3937_RS13405 overlap by 8 nucleotides
DDA3937_RS13405 and DDA3937_RS13410 overlap by 1 nucleotides
DDA3937_RS13410 and DDA3937_RS13415 are separated by 35 nucleotides
DDA3937_RS13395: DDA3937_RS13395 - flagellar basal body-associated protein FliL, at 3,058,592 to 3,059,080
_RS13395
DDA3937_RS13400: DDA3937_RS13400 - flagellar motor switch protein FliM, at 3,059,086 to 3,060,102
_RS13400
DDA3937_RS13405: DDA3937_RS13405 - flagellar motor switch protein FliN, at 3,060,095 to 3,060,511
_RS13405
DDA3937_RS13410: DDA3937_RS13410 - flagellar biosynthetic protein FliO, at 3,060,511 to 3,060,927
_RS13410
DDA3937_RS13415: DDA3937_RS13415 - flagellar type III secretion system pore protein FliP, at 3,060,963 to 3,061,700
_RS13415
Group
Condition
DDA3937
_RS13395
DDA3937
_RS13400
DDA3937
_RS13405
DDA3937
_RS13410
DDA3937
_RS13415
plant
Stem-Atlantic
-3.9
-3.8
-4.0
-3.5
-3.9
plant
Stem-Norland
-2.8
-3.8
-4.0
-3.8
-3.5
plant
Stem-Norland
-3.4
-3.6
-3.5
-2.8
-3.7
plant
Stem-Atlantic
-2.9
-3.4
-3.6
-3.5
-3.1
plant
Stem-Norland
-2.9
-3.3
-3.1
-3.8
-3.2
plant
Stem-Atlantic
-2.7
-3.1
-3.1
-3.2
-3.5
plant
Stem-Atlantic
-2.5
-3.8
-2.1
-3.6
-2.5
plant
Stem-Norland
-2.8
-2.4
-3.1
-2.6
-2.6
plant
Stem-Atlantic
-2.4
-2.4
-2.1
-2.5
-2.4
plant
Stem-Norland
-2.2
-2.6
-2.5
-2.0
-1.9
control
LB
-0.6
-0.7
-0.8
-1.0
-0.9
carbon source
M9+polygalacturonate
-0.6
-0.8
-0.9
-0.7
-0.9
control
LB
-0.4
-0.8
-1.0
-0.8
-0.7
plant
Upstate
-0.9
-0.3
-0.7
-0.7
-1.0
control
LB
-0.4
-0.8
-0.8
-0.7
-0.7
carbon source
M9+sucrose
+0.6
+1.0
+1.0
+0.9
+0.8
carbon source
M9+sucrose
+0.6
+1.0
+1.1
+0.8
+0.8
carbon source
M9+sucrose
+0.5
+1.0
+1.0
+0.9
+1.0
carbon source
M9+glucose
+1.2
+1.8
+1.7
+1.8
+1.9
carbon source
M9+glucose+arginine
+1.2
+1.9
+2.0
+1.9
+1.8
carbon source
M9+glucose+arginine
+1.0
+2.0
+2.1
+1.9
+1.9
carbon source
M9+glucose+arginine
+1.1
+2.0
+2.1
+2.0
+1.8
carbon source
M9+glucose
+1.2
+2.1
+1.9
+2.0
+2.0
carbon source
M9+glucose
+1.5
+2.4
+2.2
+2.2
+2.3
carbon source
M9+glycerol
+2.3
+3.2
+3.4
+2.8
+2.7
carbon source
M9+glycerol
+2.0
+3.2
+3.4
+3.1
+3.1
carbon source
M9+glycerol
+2.5
+3.4
+3.8
+3.3
+2.9
carbon source
M9+glycerol
+2.4
+3.7
+3.6
+3.2
+3.3
carbon source
M9+glycerol
+2.6
+3.7
+3.8
+3.2
+3.4
carbon source
M9+glycerol
+2.9
+4.0
+4.3
+3.6
+3.4
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