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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS13310 and DDA3937_RS13315 are separated by 191 nucleotides
DDA3937_RS13315 and DDA3937_RS13320 overlap by 4 nucleotides
DDA3937_RS13320 and DDA3937_RS13325 are separated by 86 nucleotides
DDA3937_RS13325 and DDA3937_RS13330 are separated by 83 nucleotides
DDA3937_RS13310: DDA3937_RS13310 - FkbM family methyltransferase, at 3,037,905 to 3,038,990
_RS13310
DDA3937_RS13315: DDA3937_RS13315 - Gfo/Idh/MocA family oxidoreductase, at 3,039,182 to 3,040,315
_RS13315
DDA3937_RS13320: DDA3937_RS13320 - ATP-grasp domain-containing protein, at 3,040,312 to 3,041,493
_RS13320
DDA3937_RS13325: DDA3937_RS13325 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 3,041,580 to 3,042,749
_RS13325
DDA3937_RS13330: DDA3937_RS13330 - methyltransferase regulatory domain-containing protein, at 3,042,833 to 3,046,278
_RS13330
Group
Condition
DDA3937
_RS13310
DDA3937
_RS13315
DDA3937
_RS13320
DDA3937
_RS13325
DDA3937
_RS13330
plant
Stem-Norland
-1.6
-2.2
-2.3
-2.1
-2.3
plant
Stem-Norland
-1.4
-2.4
-1.9
-1.8
-2.1
plant
Stem-Atlantic
-1.3
-2.0
-2.1
-1.7
-2.1
plant
Stem-Atlantic
-1.0
-1.9
-2.0
-1.4
-1.9
plant
Stem-Norland
-1.4
-2.0
-1.6
-1.2
-1.6
plant
Stem-Norland
-1.1
-1.5
-1.9
-1.3
-1.4
plant
Stem-Atlantic
-1.4
-1.5
-1.5
-1.3
-1.3
plant
Stem-Atlantic
-0.6
-2.0
-1.6
-0.8
-1.5
plant
Stem-Atlantic
-0.8
-1.5
-1.3
-0.9
-1.1
control
LB
-0.7
-0.9
-1.3
-1.2
-1.3
carbon source
M9+polygalacturonate
-0.5
-0.8
-1.3
-1.2
-1.4
control
LB
-0.7
-1.0
-1.1
-1.1
-1.2
control
LB
-0.5
-1.0
-1.1
-1.0
-1.2
carbon source
M9+polygalacturonate
-0.4
-0.4
-1.3
-1.1
-1.2
carbon source
M9+polygalacturonate
-0.5
-0.6
-1.2
-1.1
-0.9
control
LB
-0.5
-0.9
-0.9
-1.0
-1.1
plant
Stem-Norland
-0.9
-1.1
-0.6
-1.0
-0.7
control
LB
-0.4
-1.0
-1.0
-0.9
-1.0
control
LB
-0.6
-0.8
-1.2
-0.7
-1.0
carbon source
M9+glucose+arginine
+1.0
+0.6
+1.0
+1.1
+1.1
carbon source
M9+sucrose
+0.9
+1.1
+1.0
+0.9
+0.9
plant
Atlantic
+0.2
+0.5
+1.3
+1.4
+1.5
carbon source
M9+glucose
+0.9
+1.2
+1.2
+1.3
+1.3
plant
Upstate
+0.7
+1.2
+1.6
+1.7
+1.9
carbon source
M9+glycerol
+1.2
+1.6
+2.0
+2.0
+2.2
carbon source
M9+glycerol
+1.3
+1.9
+2.9
+2.5
+2.8
carbon source
M9+glycerol
+1.9
+2.3
+2.9
+2.7
+3.0
carbon source
M9+glycerol
+1.6
+2.3
+3.2
+3.1
+3.3
carbon source
M9+glycerol
+1.7
+2.6
+3.5
+3.2
+3.4
carbon source
M9+glycerol
+1.7
+2.6
+3.3
+3.4
+3.5
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