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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS13290 and DDA3937_RS13295 are separated by 531 nucleotides
DDA3937_RS13295 and DDA3937_RS13300 are separated by 54 nucleotides
DDA3937_RS13300 and DDA3937_RS13305 are separated by 379 nucleotides
DDA3937_RS13305 and DDA3937_RS13310 are separated by 103 nucleotides
DDA3937_RS13290: DDA3937_RS13290 - phosphate starvation-inducible protein PhoH, at 3,033,385 to 3,034,173
_RS13290
DDA3937_RS13295: DDA3937_RS13295 - flagella biosynthesis regulatory protein FliZ, at 3,034,705 to 3,035,217
_RS13295
DDA3937_RS13300: DDA3937_RS13300 - RNA polymerase sigma factor FliA, at 3,035,272 to 3,035,994
_RS13300
DDA3937_RS13305: DDA3937_RS13305 - hypothetical protein, at 3,036,374 to 3,037,801
_RS13305
DDA3937_RS13310: DDA3937_RS13310 - FkbM family methyltransferase, at 3,037,905 to 3,038,990
_RS13310
Group
Condition
DDA3937
_RS13290
DDA3937
_RS13295
DDA3937
_RS13300
DDA3937
_RS13305
DDA3937
_RS13310
plant
Stem-Norland
-0.1
-1.2
-3.1
-2.8
-1.6
plant
Stem-Atlantic
-0.0
-0.4
-3.2
-2.8
-1.3
plant
Stem-Norland
+0.3
-0.0
-3.3
-3.1
-1.4
plant
Stem-Norland
+0.2
-0.3
-2.4
-2.8
-1.4
plant
Stem-Atlantic
-0.1
+0.2
-2.9
-3.0
-0.6
plant
Stem-Atlantic
+0.1
-0.5
-2.3
-2.2
-1.4
plant
Stem-Norland
+0.0
-0.1
-3.2
-1.9
-1.1
plant
Stem-Atlantic
+0.2
+0.5
-3.2
-2.6
-1.0
plant
Stem-Norland
+0.1
+0.3
-2.0
-1.9
-0.9
plant
Stem-Atlantic
+0.4
+0.7
-2.6
-1.3
-0.8
control
PDB
-0.2
-0.7
-0.7
-0.7
-0.3
plant
Norland
-0.1
-0.0
-0.7
-1.0
-0.2
control
LB
+0.1
-0.1
-1.0
+0.1
-0.7
plant
Upstate
-0.0
-0.2
-0.7
-0.9
+0.4
carbon source
M9+glucose
-0.1
-0.6
+1.2
+0.2
+0.0
carbon source
M9+glucose+arginine
+0.1
-0.7
+1.6
-0.5
+0.3
carbon source
M9+glucose
+0.2
-0.5
+1.6
-0.2
+0.3
carbon source
M9+glucose+arginine
-0.0
-0.3
+1.7
-0.1
+0.3
plant
Atlantic
-0.2
+0.1
+0.8
+0.7
+0.5
plant
Atlantic
-0.1
+0.5
+0.9
+0.3
+0.2
carbon source
M9+glucose
+0.2
-0.6
+2.0
-0.3
+0.9
carbon source
M9+sucrose
+0.1
-0.1
+1.0
+0.2
+1.1
carbon source
M9+sucrose
+0.2
-0.1
+1.2
+0.2
+0.9
carbon source
M9+glucose+arginine
+0.3
-0.3
+1.8
+0.2
+1.0
carbon source
M9+glycerol
-0.2
-0.0
+3.5
+0.7
+1.3
carbon source
M9+glycerol
-0.1
-0.0
+3.7
+1.0
+1.2
carbon source
M9+glycerol
-0.3
-0.3
+4.2
+1.1
+1.6
carbon source
M9+glycerol
-0.3
+0.2
+4.0
+1.2
+1.7
carbon source
M9+glycerol
-0.1
+0.0
+4.1
+1.0
+1.9
carbon source
M9+glycerol
-0.1
-0.4
+4.6
+1.3
+1.7
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