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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS12950 and DDA3937_RS12955 are separated by 186 nucleotides
DDA3937_RS12955 and DDA3937_RS12960 are separated by 2 nucleotides
DDA3937_RS12960 and DDA3937_RS12965 are separated by 73 nucleotides
DDA3937_RS12965 and DDA3937_RS12970 are separated by 304 nucleotides
DDA3937_RS12950: DDA3937_RS12950 - C40 family peptidase, at 2,955,751 to 2,956,215
_RS12950
DDA3937_RS12955: DDA3937_RS12955 - vitamin B12 ABC transporter ATP-binding protein BtuD, at 2,956,402 to 2,957,172
_RS12955
DDA3937_RS12960: DDA3937_RS12960 - glutathione peroxidase, at 2,957,175 to 2,957,726
_RS12960
DDA3937_RS12965: DDA3937_RS12965 - vitamin B12 ABC transporter permease BtuC, at 2,957,800 to 2,958,801
_RS12965
DDA3937_RS12970: DDA3937_RS12970 - hypothetical protein, at 2,959,106 to 2,959,360
_RS12970
Group
Condition
DDA3937
_RS12950
DDA3937
_RS12955
DDA3937
_RS12960
DDA3937
_RS12965
DDA3937
_RS12970
control
PDB
-0.8
-0.4
-0.0
-0.2
-1.4
control
PDB
-0.4
-0.2
-0.0
+0.2
-0.7
control
PDB
-1.1
+0.4
-0.1
-0.7
+0.4
control
PDB
-0.1
+0.6
-0.3
-0.6
-0.5
carbon source
M9+sucrose
-0.6
+0.1
-0.0
-0.1
-0.1
plant
Stem-Atlantic
+0.4
-0.1
-0.2
-0.6
-0.2
stress
7.5mM_PTB
+0.2
-0.3
-0.3
-0.2
-0.0
plant
Atlantic
+0.1
-0.0
+0.0
+0.1
-0.7
plant
Stem-Norland
+0.2
+0.3
-0.4
-0.2
-0.4
carbon source
M9+glucose
-0.3
+0.1
-0.1
-0.3
+0.3
carbon source
M9+glucose
-0.6
-0.0
+0.2
-0.0
+0.3
plant
Atlantic
-0.4
-0.4
-0.3
+0.4
+0.5
control
PDB
-0.2
-0.1
-0.8
+0.4
+0.5
plant
Norland
+0.5
+0.1
+0.2
-0.4
-0.1
carbon source
M9+glycerol
+0.0
+0.3
+0.2
-0.4
+0.2
carbon source
M9+glycerol
+0.1
-0.1
+0.2
-0.2
+0.4
control
PDB
-0.4
+0.4
+0.2
-0.0
+0.2
carbon source
M9+starch
+0.2
+0.3
-0.2
-0.1
+0.3
plant
Norland
-0.4
+0.7
+0.9
-0.4
-0.0
plant
Stem-Atlantic
+0.4
-0.3
+0.2
+0.2
+0.2
plant
Atlantic
+0.8
+0.3
-0.2
-0.1
+0.1
carbon source
M9+glucose
+0.2
+0.1
+0.2
-0.3
+0.7
plant
Norland
+0.4
+0.6
-0.1
-0.1
+0.2
plant
Stem-Norland
+0.2
-0.1
+0.5
+0.3
+0.2
carbon source
M9+polygalacturonate
+0.3
+0.1
+0.2
-0.1
+0.6
plant
Norland
+0.3
+0.7
+0.1
-0.0
+0.1
plant
Stem-Norland
+0.1
+0.3
-0.0
-0.1
+0.8
plant
Stem-Atlantic
+0.5
+0.4
+0.4
+0.1
-0.1
plant
Stem-Atlantic
-0.1
+0.7
+0.4
+0.4
+0.5
plant
Upstate
-0.0
+0.0
+0.6
+0.4
+1.1
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DDA3937_RS12960
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