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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS12930 and DDA3937_RS12935 are separated by 343 nucleotides
DDA3937_RS12935 and DDA3937_RS12940 are separated by 164 nucleotides
DDA3937_RS12940 and DDA3937_RS12945 are separated by 323 nucleotides
DDA3937_RS12945 and DDA3937_RS12950 are separated by 46 nucleotides
DDA3937_RS12930: DDA3937_RS12930 - L,D-transpeptidase, at 2,949,982 to 2,951,670
_RS12930
DDA3937_RS12935: DDA3937_RS12935 - YdiU family protein, at 2,952,014 to 2,953,465
_RS12935
DDA3937_RS12940: DDA3937_RS12940 - EAL domain-containing protein, at 2,953,630 to 2,954,364
_RS12940
DDA3937_RS12945: DDA3937_RS12945 - lipoate--protein ligase A, at 2,954,688 to 2,955,704
_RS12945
DDA3937_RS12950: DDA3937_RS12950 - C40 family peptidase, at 2,955,751 to 2,956,215
_RS12950
Group
Condition
DDA3937
_RS12930
DDA3937
_RS12935
DDA3937
_RS12940
DDA3937
_RS12945
DDA3937
_RS12950
control
PDB
-0.2
-0.0
-0.2
-0.8
-1.1
control
PDB
+0.1
+0.0
-0.6
-0.1
-0.8
carbon source
M9+glucose
-0.5
-0.1
+0.1
-0.2
-0.6
control
PDB
+0.0
-0.1
-0.5
-0.3
-0.4
control
PDB
-0.3
-0.3
-0.1
-0.2
-0.2
carbon source
M9+glucose
-0.5
+0.0
+0.1
-0.3
-0.3
carbon source
M9+glucose+arginine
-0.3
-0.2
-0.4
-0.1
+0.1
carbon source
M9+glycerol
+0.1
-0.2
-0.6
-0.2
+0.0
control
PDB
-0.4
+0.2
-0.1
-0.1
-0.4
carbon source
M9+glycerol
+0.1
-0.2
-0.4
-0.3
+0.1
plant
Stem-Norland
+0.0
+0.1
-0.5
-0.4
+0.3
carbon source
M9+glycerol
+0.3
-0.1
-0.5
-0.2
+0.1
carbon source
M9+glycerol
+0.3
-0.2
-0.5
+0.1
+0.1
plant
Norland
+0.9
-0.1
+0.1
-0.3
-0.4
plant
Upstate
+0.5
+0.1
-0.8
+0.5
-0.0
plant
Atlantic
+0.9
+0.0
+0.1
+0.2
-0.4
plant
Norland
+0.6
-0.1
-0.2
+0.1
+0.5
plant
Upstate
+0.9
-0.0
-0.1
+0.2
-0.1
plant
Stem-Atlantic
+0.4
-0.2
+0.4
+0.0
+0.4
stress
7.5mM_PTB
+0.7
-0.0
-0.0
+0.1
+0.2
plant
Atlantic
+0.4
-0.1
+0.4
+0.2
+0.1
plant
Norland
+0.6
+0.1
+0.0
+0.1
+0.4
plant
Upstate
+1.0
-0.2
+0.1
+0.1
+0.2
plant
Upstate
+0.5
+0.1
+0.1
+0.3
+0.3
plant
Norland
+0.7
+0.0
+0.1
+0.1
+0.4
plant
Atlantic
+0.6
-0.0
+0.2
+0.2
+0.3
plant
Atlantic
+0.8
-0.0
+0.3
+0.0
+0.3
plant
Norland
+0.6
+0.2
+0.3
+0.2
+0.3
plant
Norland
+1.0
+0.0
+0.3
+0.4
+0.1
plant
Atlantic
+0.9
+0.1
+0.3
+0.0
+0.8
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