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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS12355 and DDA3937_RS12360 are separated by 152 nucleotides
DDA3937_RS12360 and DDA3937_RS12365 are separated by 13 nucleotides
DDA3937_RS12365 and DDA3937_RS12370 are separated by 116 nucleotides
DDA3937_RS12370 and DDA3937_RS12375 are separated by 442 nucleotides
DDA3937_RS12355: DDA3937_RS12355 - MFS transporter, at 2,810,499 to 2,811,911
_RS12355
DDA3937_RS12360: DDA3937_RS12360 - helix-turn-helix domain-containing protein, at 2,812,064 to 2,812,981
_RS12360
DDA3937_RS12365: DDA3937_RS12365 - penicillin acylase family protein, at 2,812,995 to 2,815,328
_RS12365
DDA3937_RS12370: DDA3937_RS12370 - GNAT family N-acetyltransferase, at 2,815,445 to 2,815,993
_RS12370
DDA3937_RS12375: DDA3937_RS12375 - nuclear transport factor 2 family protein, at 2,816,436 to 2,816,840
_RS12375
Group
Condition
DDA3937
_RS12355
DDA3937
_RS12360
DDA3937
_RS12365
DDA3937
_RS12370
DDA3937
_RS12375
plant
Upstate
-0.0
-0.3
-0.2
-0.2
-0.3
control
PDB
-0.4
-0.0
-0.3
+0.1
-0.1
carbon source
M9+glycerol
+0.2
-0.6
-0.0
-0.0
-0.2
carbon source
M9+glucose+arginine
-0.3
+0.2
-0.1
-0.1
-0.2
plant
Stem-Norland
-0.2
-0.1
+0.2
+0.1
-0.5
plant
Norland
-0.3
-0.2
-0.1
-0.2
+0.4
control
PDB
-0.1
-0.2
+0.3
-0.3
+0.2
carbon source
M9+glucose
+0.1
-0.0
+0.2
-0.2
-0.2
plant
Stem-Atlantic
-0.2
+0.3
+0.1
-0.0
-0.2
stress
1.88mM_PTB
+0.1
-0.3
+0.0
+0.2
+0.1
plant
Upstate
+0.3
-0.2
-0.2
+0.2
+0.1
plant
Upstate
+0.3
-0.4
+0.1
-0.0
+0.1
plant
Upstate
+0.2
-0.4
-0.2
+0.3
+0.2
carbon source
M9+glycerol
+0.2
-0.2
-0.0
+0.0
+0.2
control
PDB
+0.5
-0.3
-0.1
-0.1
+0.2
plant
Norland
+0.2
-0.2
-0.1
+0.4
+0.0
control
PDB
-0.2
+0.4
-0.0
+0.0
+0.0
plant
Stem-Atlantic
+0.0
+0.1
+0.3
-0.3
+0.2
plant
Norland
+0.4
+0.2
-0.1
-0.5
+0.5
plant
Stem-Norland
+0.3
+0.1
-0.1
+0.3
-0.2
plant
Stem-Norland
-0.2
+0.2
+0.1
+0.0
+0.3
plant
Stem-Norland
+0.2
-0.1
+0.1
+0.2
+0.1
carbon source
M9+glycerol
+0.6
+0.2
-0.0
+0.2
-0.6
carbon source
M9+glucose
+0.3
+0.3
+0.1
-0.0
-0.1
plant
Norland
+0.5
-0.2
+0.2
+0.1
+0.0
plant
Atlantic
-0.1
+0.1
-0.0
+0.1
+0.5
control
PDB
+0.0
+0.3
+0.4
+0.1
-0.1
plant
Atlantic
+0.3
+0.4
-0.0
-0.0
+0.4
plant
Atlantic
+0.2
+0.5
+0.2
+0.0
+0.3
plant
Stem-Atlantic
+0.1
+1.0
+0.0
+0.3
+0.3
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