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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS12270 and DDA3937_RS12275 are separated by 358 nucleotides
DDA3937_RS12275 and DDA3937_RS12280 are separated by 114 nucleotides
DDA3937_RS12280 and DDA3937_RS12285 are separated by 24 nucleotides
DDA3937_RS12285 and DDA3937_RS12290 are separated by 305 nucleotides
DDA3937_RS12270: DDA3937_RS12270 - ATP-dependent RNA helicase HrpA, at 2,787,406 to 2,791,293
_RS12270
DDA3937_RS12275: DDA3937_RS12275 - FMN-dependent NADH-azoreductase, at 2,791,652 to 2,792,257
_RS12275
DDA3937_RS12280: DDA3937_RS12280 - YnbE family lipoprotein, at 2,792,372 to 2,792,629
_RS12280
DDA3937_RS12285: DDA3937_RS12285 - YdbH family protein, at 2,792,654 to 2,795,257
_RS12285
DDA3937_RS12290: DDA3937_RS12290 - PAS domain-containing protein, at 2,795,563 to 2,797,116
_RS12290
Group
Condition
DDA3937
_RS12270
DDA3937
_RS12275
DDA3937
_RS12280
DDA3937
_RS12285
DDA3937
_RS12290
plant
Stem-Norland
+0.2
-0.5
-0.8
-0.2
-0.4
control
PDB
+0.0
+0.2
-2.5
+0.1
+0.6
carbon source
M9+glucose
-0.5
-0.1
-0.7
-0.0
-0.3
control
LB
-0.1
-0.1
-0.7
+0.1
-0.3
plant
Upstate
+0.2
-0.9
-0.6
+0.1
+0.1
control
PDB
+0.2
+0.4
-1.3
-0.2
+0.0
plant
Atlantic
-0.2
+0.1
-1.0
+0.1
+0.1
plant
Norland
-0.3
-0.3
-1.1
+0.2
+0.6
plant
Norland
+0.1
+0.1
-0.9
-0.2
+0.2
plant
Upstate
+0.2
-0.1
-1.2
+0.2
+0.4
carbon source
M9+glycerol
+0.0
+0.3
-0.6
+0.2
-0.3
control
PDB
-0.4
+0.4
+0.1
-0.2
-0.2
plant
Upstate
+0.2
-0.2
-0.6
-0.2
+0.7
plant
Atlantic
+0.2
+0.1
-0.4
+0.3
-0.2
control
PDB
+0.1
+0.0
-0.8
+0.3
+0.3
plant
Stem-Norland
+0.1
+0.3
+0.2
+0.1
-0.6
plant
Upstate
-0.1
+0.7
-0.7
+0.1
+0.1
carbon source
M9+glucose
-0.5
+0.1
+0.7
-0.0
-0.0
plant
Atlantic
+0.1
+0.5
-0.8
+0.4
+0.1
carbon source
M9+glucose
-0.4
+0.5
+0.4
+0.1
-0.2
plant
Norland
+0.0
+0.9
-0.3
+0.1
-0.0
plant
Stem-Atlantic
-0.3
+0.3
+0.3
+0.5
+0.0
plant
Stem-Atlantic
+0.1
-0.1
+1.0
-0.2
+0.1
carbon source
M9+glucose+arginine
-0.4
+0.4
+0.9
+0.3
-0.2
carbon source
M9+glucose+arginine
-0.4
+0.6
+1.1
+0.0
-0.0
plant
Norland
-0.1
-0.1
+1.7
-0.3
+0.2
plant
Stem-Atlantic
+0.3
-0.1
+0.9
+0.1
+0.4
plant
Stem-Norland
+0.0
+0.1
+1.1
-0.1
+0.6
plant
Stem-Atlantic
+0.3
-0.2
+1.4
+0.2
+0.1
plant
Stem-Norland
+0.2
-0.5
+2.1
-0.1
+0.2
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