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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS11365 and DDA3937_RS11370 are separated by 271 nucleotides
DDA3937_RS11370 and DDA3937_RS11375 are separated by 77 nucleotides
DDA3937_RS11375 and DDA3937_RS11380 are separated by 136 nucleotides
DDA3937_RS11380 and DDA3937_RS11385 are separated by 80 nucleotides
DDA3937_RS11365: DDA3937_RS11365 - oligogalacturonate-specific porin KdgM, at 2,581,701 to 2,582,411
_RS11365
DDA3937_RS11370: DDA3937_RS11370 - alpha/beta hydrolase, at 2,582,683 to 2,583,651
_RS11370
DDA3937_RS11375: DDA3937_RS11375 - metal-dependent hydrolase, at 2,583,729 to 2,584,307
_RS11375
DDA3937_RS11380: DDA3937_RS11380 - L-cystine transporter, at 2,584,444 to 2,585,835
_RS11380
DDA3937_RS11385: DDA3937_RS11385 - osmotically-inducible lipoprotein OsmE, at 2,585,916 to 2,586,245
_RS11385
Group
Condition
DDA3937
_RS11365
DDA3937
_RS11370
DDA3937
_RS11375
DDA3937
_RS11380
DDA3937
_RS11385
plant
Stem-Norland
-3.9
-0.1
+0.9
+0.1
+0.4
control
PDB
-2.2
+0.3
-0.1
-0.3
-0.3
plant
Stem-Norland
-1.7
-0.0
-0.4
-0.3
-0.0
plant
Stem-Atlantic
-1.8
+0.4
-0.7
-0.2
+0.1
control
PDB
-2.8
+0.2
-0.0
-0.1
+0.5
plant
Stem-Atlantic
-2.0
+0.5
-0.4
-0.1
+0.1
plant
Upstate
-1.1
+0.0
-0.4
-0.2
-0.0
control
PDB
-1.7
-0.2
+0.4
-0.6
+0.3
plant
Stem-Atlantic
-1.7
-0.1
+0.2
+0.1
-0.0
carbon source
M9+glucose+arginine
-2.1
+0.2
+0.4
-0.1
+0.0
plant
Atlantic
-0.9
-0.0
-0.4
-0.2
-0.0
plant
Stem-Norland
-1.5
+0.2
-0.2
-0.0
+0.1
plant
Norland
-1.0
-0.0
-0.2
+0.1
-0.2
plant
Norland
-1.1
+0.1
-0.1
-0.2
+0.2
control
LB
-1.2
-0.1
+0.1
-0.0
+0.0
plant
Stem-Norland
-1.5
+0.3
+0.1
-0.1
+0.3
carbon source
M9+starch
-0.7
+0.3
-0.5
-0.1
+0.1
plant
Stem-Norland
-1.4
+0.2
+0.3
-0.2
+0.1
carbon source
M9+glucose+arginine
-1.0
-0.2
+0.1
+0.0
+0.2
carbon source
M9+polygalacturonate
-1.3
+0.1
+0.4
-0.1
+0.0
carbon source
M9+polygalacturonate
-0.9
+0.2
-0.2
-0.0
+0.2
stress
7.5mM_PTB
-0.8
+0.1
+0.2
-0.2
+0.3
plant
Atlantic
-0.7
+0.2
+0.2
+0.1
-0.3
carbon source
M9+polygalacturonate
-0.9
+0.4
+0.2
+0.0
+0.1
carbon source
M9+glucose+arginine
-1.0
+0.2
+0.5
+0.1
+0.1
control
PDB
+0.1
+0.6
-0.3
-0.2
+0.2
plant
Stem-Atlantic
-0.9
+0.1
+0.9
+0.3
+0.3
carbon source
M9+glycerol
+0.5
+0.4
-0.3
-0.0
+0.3
plant
Norland
+0.7
+0.3
+0.1
-0.1
+0.4
plant
Atlantic
+0.5
+0.7
+0.5
+0.3
+0.0
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