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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS11345 and DDA3937_RS11350 overlap by 8 nucleotides
DDA3937_RS11350 and DDA3937_RS11355 are separated by 13 nucleotides
DDA3937_RS11355 and DDA3937_RS11360 are separated by 14 nucleotides
DDA3937_RS11360 and DDA3937_RS11365 are separated by 249 nucleotides
DDA3937_RS11345: DDA3937_RS11345 - sugar ABC transporter permease, at 2,577,218 to 2,578,108
_RS11345
DDA3937_RS11350: DDA3937_RS11350 - carbohydrate ABC transporter permease, at 2,578,101 to 2,579,003
_RS11350
DDA3937_RS11355: DDA3937_RS11355 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 2,579,017 to 2,580,144
_RS11355
DDA3937_RS11360: DDA3937_RS11360 - carbohydrate ABC transporter substrate-binding protein, at 2,580,159 to 2,581,451
_RS11360
DDA3937_RS11365: DDA3937_RS11365 - oligogalacturonate-specific porin KdgM, at 2,581,701 to 2,582,411
_RS11365
Group
Condition
DDA3937
_RS11345
DDA3937
_RS11350
DDA3937
_RS11355
DDA3937
_RS11360
DDA3937
_RS11365
plant
Stem-Norland
-1.9
-1.7
-1.8
-1.9
-1.7
plant
Stem-Norland
-0.9
-0.6
-0.8
-0.8
-3.9
plant
Stem-Norland
-1.2
-1.0
-1.2
-1.3
-1.5
plant
Stem-Atlantic
-1.1
-1.1
-0.7
-1.2
-1.7
plant
Stem-Atlantic
-0.6
-1.4
-0.7
-0.5
-1.8
control
PDB
-0.1
+0.0
-0.7
-0.6
-2.8
carbon source
M9+polygalacturonate
-0.6
-0.6
-0.8
-0.8
-1.3
plant
Stem-Norland
-0.9
-0.7
-0.7
-0.2
-1.5
plant
Stem-Atlantic
-0.6
-0.9
-0.5
-0.8
-0.9
carbon source
M9+polygalacturonate
-0.6
-0.7
-0.6
-0.7
-0.9
plant
Stem-Atlantic
-0.8
-0.7
-0.7
-0.9
-0.3
carbon source
M9+polygalacturonate
-0.6
-0.6
-0.7
-0.5
-0.9
plant
Stem-Atlantic
-0.5
-0.3
-0.0
-0.4
-2.0
plant
Stem-Norland
-0.5
-0.2
-0.4
-0.5
-1.4
carbon source
M9+glucose+arginine
-0.2
-0.5
-0.1
-0.1
-2.1
carbon source
M9+glucose+arginine
-0.4
-0.4
-0.1
-0.0
-1.0
control
PDB
+0.2
-0.2
+0.0
+0.1
-2.2
control
PDB
-0.1
+0.1
-0.1
-0.2
-1.7
plant
Upstate
+0.0
-0.2
+0.0
-0.6
-1.1
carbon source
M9+glucose+arginine
-0.2
-0.3
-0.2
-0.2
-1.0
carbon source
M9+glucose
-0.2
-0.2
-0.2
-0.2
-0.7
control
LB
-0.1
-0.0
+0.1
-0.1
-1.2
carbon source
M9+starch
-0.1
-0.2
+0.0
-0.4
-0.7
control
PDB
-0.1
+0.2
+0.0
-0.5
-0.7
plant
Atlantic
+0.0
+0.0
+0.4
-0.2
-0.8
plant
Norland
+0.4
+0.1
-0.0
+0.1
-1.1
plant
Norland
+0.1
+0.2
+0.2
-0.1
-1.0
plant
Norland
+0.2
+0.3
-0.4
+0.4
-0.5
plant
Atlantic
+0.4
+0.0
+0.4
+0.4
-0.9
plant
Norland
+0.0
+0.4
-0.3
+0.2
+0.7
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