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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS11035 and DDA3937_RS11040 are separated by 928 nucleotides
DDA3937_RS11040 and DDA3937_RS11045 are separated by 369 nucleotides
DDA3937_RS11045 and DDA3937_RS11050 are separated by 261 nucleotides
DDA3937_RS11050 and DDA3937_RS11055 overlap by 14 nucleotides
DDA3937_RS11035: DDA3937_RS11035 - redox-regulated ATPase YchF, at 2,488,646 to 2,489,737
_RS11035
DDA3937_RS11040: DDA3937_RS11040 - xylanase, at 2,490,666 to 2,491,907
_RS11040
DDA3937_RS11045: DDA3937_RS11045 - ATP-dependent RNA helicase DbpA, at 2,492,277 to 2,493,650
_RS11045
DDA3937_RS11050: DDA3937_RS11050 - tetratricopeptide repeat protein, at 2,493,912 to 2,494,463
_RS11050
DDA3937_RS11055: DDA3937_RS11055 - sigma-70 family RNA polymerase sigma factor, at 2,494,450 to 2,495,001
_RS11055
Group
Condition
DDA3937
_RS11035
DDA3937
_RS11040
DDA3937
_RS11045
DDA3937
_RS11050
DDA3937
_RS11055
plant
Stem-Atlantic
-2.1
-0.2
-0.6
-0.1
+0.0
carbon source
M9+glucose+arginine
-2.7
-0.1
+0.2
+0.1
-0.4
carbon source
M9+sucrose
-1.8
-0.4
-0.0
-0.2
-0.5
carbon source
M9+glucose
-2.8
-0.2
+0.4
+0.1
+0.0
carbon source
M9+glucose+arginine
-2.4
-0.4
+0.2
+0.3
-0.1
plant
Stem-Norland
-2.5
+0.1
-0.3
-0.0
+0.3
plant
Norland
-2.0
+0.1
+0.0
-0.2
-0.2
carbon source
M9+glucose
-2.3
-0.0
-0.1
+0.2
+0.2
plant
Stem-Norland
-1.7
-0.4
-0.1
-0.0
+0.1
carbon source
M9+starch
-1.8
-0.1
+0.2
-0.2
-0.2
plant
Stem-Atlantic
-2.5
+0.3
+0.0
+0.1
+0.0
control
LB
-2.1
-0.0
+0.0
+0.2
-0.0
carbon source
M9+glucose
-1.9
-0.1
-0.1
-0.0
+0.2
plant
Norland
-1.9
+0.0
-0.0
-0.0
+0.1
plant
Upstate
-1.9
+0.2
-0.4
+0.1
+0.2
plant
Upstate
-1.6
-0.0
-0.1
+0.2
-0.2
control
PDB
-1.2
-0.1
+0.2
+0.4
-1.0
plant
Atlantic
-1.9
+0.1
+0.1
-0.2
+0.2
plant
Upstate
-2.0
+0.0
-0.1
-0.0
+0.5
carbon source
M9+glucose+arginine
-1.9
+0.0
+0.5
-0.1
-0.0
plant
Norland
-1.5
+0.1
+0.1
-0.4
+0.1
plant
Atlantic
-1.5
-0.1
-0.3
+0.0
+0.3
control
PDB
-1.2
-1.0
-0.2
+0.3
+0.7
control
LB
-1.8
+0.0
+0.2
+0.1
+0.2
plant
Stem-Atlantic
-1.4
+0.0
+0.1
+0.3
-0.3
plant
Stem-Atlantic
-1.3
-0.2
+0.3
+0.3
+0.1
plant
Atlantic
-1.4
+0.1
-0.2
+0.1
+0.6
plant
Stem-Norland
-1.3
+0.4
+0.1
+0.2
-0.1
control
PDB
-1.2
+0.0
+0.2
+0.6
-0.2
plant
Stem-Atlantic
-1.3
+0.4
-0.2
+0.5
+0.6
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