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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS10910 and DDA3937_RS10915 are separated by 236 nucleotides
DDA3937_RS10915 and DDA3937_RS10920 are separated by 93 nucleotides
DDA3937_RS10920 and DDA3937_RS10925 are separated by 234 nucleotides
DDA3937_RS10925 and DDA3937_RS10930 are separated by 456 nucleotides
DDA3937_RS10910: DDA3937_RS10910 - phenolic acid decarboxylase, at 2,461,593 to 2,462,099
_RS10910
DDA3937_RS10915: DDA3937_RS10915 - PTS ascorbate transporter subunit IIC, at 2,462,336 to 2,463,613
_RS10915
DDA3937_RS10920: DDA3937_RS10920 - HAMP domain-containing protein, at 2,463,707 to 2,465,683
_RS10920
DDA3937_RS10925: DDA3937_RS10925 - hypothetical protein, at 2,465,918 to 2,466,487
_RS10925
DDA3937_RS10930: DDA3937_RS10930 - superoxide dismutase family protein, at 2,466,944 to 2,467,468
_RS10930
Group
Condition
DDA3937
_RS10910
DDA3937
_RS10915
DDA3937
_RS10920
DDA3937
_RS10925
DDA3937
_RS10930
control
PDB
-0.1
-0.1
-0.1
-0.7
+0.2
stress
3.75mM_PTB
-0.2
-0.1
-0.1
-0.5
+0.0
plant
Stem-Norland
+0.0
-0.2
-0.0
-0.5
+0.1
control
PDB
-0.3
+0.2
-0.2
-0.6
+0.6
carbon source
M9+glycerol
+0.4
-0.0
+0.1
-0.5
-0.2
plant
Stem-Norland
+0.3
-0.0
+0.1
-0.7
+0.2
plant
Upstate
+0.2
-0.0
-0.2
-0.2
+0.2
plant
Norland
+0.3
-0.1
-0.0
-0.1
-0.3
plant
Norland
+0.0
+0.4
-0.3
-0.1
-0.1
stress
3.75mM_PTB
+0.1
-0.1
+0.1
-0.3
+0.2
control
PDB
+0.1
+0.4
+0.2
-0.2
-0.4
plant
Stem-Atlantic
+0.2
+0.0
-0.3
+0.1
-0.0
carbon source
M9+glucose+arginine
+0.1
+0.0
+0.3
-0.1
-0.2
plant
Atlantic
+0.0
-0.1
-0.2
+0.2
+0.2
plant
Stem-Atlantic
+0.5
+0.1
-0.1
+0.1
-0.4
control
PDB
+0.1
+0.1
+0.0
-0.4
+0.5
plant
Upstate
+0.2
+0.2
-0.0
-0.7
+0.6
carbon source
M9+polygalacturonate
+0.1
+0.1
+0.2
+0.2
-0.2
control
PDB
+0.0
+0.1
-0.2
+0.3
-0.1
plant
Upstate
+0.1
-0.1
+0.3
-0.2
+0.2
stress
1.88mM_PTB
+0.2
+0.0
+0.1
-0.2
+0.3
carbon source
M9+glycerol
+0.4
+0.1
+0.0
-0.2
+0.2
plant
Norland
+0.0
+0.1
-0.1
-0.1
+0.7
carbon source
M9+glucose
+0.1
+0.1
+0.4
-0.1
-0.0
plant
Upstate
+0.1
+0.3
+0.1
-0.1
+0.2
plant
Stem-Atlantic
+0.4
+0.3
-0.1
+0.2
-0.3
control
PDB
+0.1
+0.5
+0.1
-0.2
+0.2
plant
Stem-Norland
+0.2
-0.1
+0.1
+0.3
+0.1
carbon source
M9+glycerol
+0.3
-0.0
-0.1
-0.1
+0.6
plant
Atlantic
-0.0
+0.3
+0.2
+0.3
+0.1
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