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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS10840 and DDA3937_RS10845 are separated by 2 nucleotides
DDA3937_RS10845 and DDA3937_RS10850 overlap by 4 nucleotides
DDA3937_RS10850 and DDA3937_RS10855 are separated by 587 nucleotides
DDA3937_RS10855 and DDA3937_RS10860 overlap by 4 nucleotides
DDA3937_RS10840: DDA3937_RS10840 - hypothetical protein, at 2,441,876 to 2,443,192
_RS10840
DDA3937_RS10845: DDA3937_RS10845 - virulence factor SrfB, at 2,443,195 to 2,446,185
_RS10845
DDA3937_RS10850: DDA3937_RS10850 - virulence factor, at 2,446,182 to 2,448,686
_RS10850
DDA3937_RS10855: DDA3937_RS10855 - hypothetical protein, at 2,449,274 to 2,449,729
_RS10855
DDA3937_RS10860: DDA3937_RS10860 - GMC family oxidoreductase, at 2,449,726 to 2,451,564
_RS10860
Group
Condition
DDA3937
_RS10840
DDA3937
_RS10845
DDA3937
_RS10850
DDA3937
_RS10855
DDA3937
_RS10860
plant
Stem-Norland
-4.3
-3.5
-3.1
-0.9
+0.0
plant
Stem-Atlantic
-3.7
-4.1
-3.0
-0.6
+0.2
plant
Stem-Norland
-3.8
-3.8
-3.4
+0.1
+0.2
plant
Stem-Atlantic
-3.9
-3.2
-2.8
-0.6
+0.2
plant
Stem-Norland
-3.3
-3.5
-2.9
-0.1
+0.1
plant
Stem-Atlantic
-3.5
-3.5
-2.9
-0.1
+0.1
plant
Stem-Norland
-3.1
-2.8
-2.6
+0.0
+0.1
plant
Stem-Atlantic
-3.1
-3.3
-3.2
+1.3
+0.3
plant
Stem-Norland
-2.9
-2.9
-2.6
+0.7
+0.2
plant
Stem-Atlantic
-2.6
-2.4
-2.2
+0.4
+0.1
plant
Upstate
-0.8
-1.0
-0.9
+0.6
+0.0
control
PDB
+0.8
+0.6
+0.6
-2.8
+0.1
plant
Norland
+0.2
-0.5
-0.3
+2.2
+0.0
control
PDB
+0.6
+0.5
+0.5
+1.0
+0.1
control
PDB
+0.5
-0.0
+0.3
+1.9
+0.3
plant
Upstate
+0.6
+0.2
+0.3
+1.5
+0.4
plant
Atlantic
+0.4
+0.5
+0.3
+1.8
+0.1
control
PDB
+0.9
+0.8
+0.6
+1.3
+0.2
carbon source
M9+glucose+arginine
+1.6
+1.5
+1.7
-1.0
+0.2
carbon source
M9+glucose
+1.7
+1.8
+1.6
-0.8
+0.1
carbon source
M9+glucose+arginine
+1.5
+1.6
+1.5
+0.2
+0.3
carbon source
M9+glucose
+1.9
+1.9
+1.8
-0.3
+0.2
carbon source
M9+glucose+arginine
+1.6
+1.7
+1.6
+0.2
+0.3
carbon source
M9+glycerol
+1.9
+2.2
+1.8
+0.1
-0.0
carbon source
M9+glycerol
+2.4
+2.1
+2.0
-0.6
+0.2
carbon source
M9+glucose
+1.9
+2.0
+1.9
+0.1
+0.3
carbon source
M9+glycerol
+2.1
+2.2
+2.0
-0.0
+0.0
carbon source
M9+glycerol
+2.3
+2.5
+2.5
-0.7
-0.0
carbon source
M9+glycerol
+2.5
+2.4
+2.4
-0.7
+0.1
carbon source
M9+glycerol
+2.4
+2.2
+2.0
+0.4
-0.2
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DDA3937_RS10850
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