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Gene
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Cofit
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS10760 and DDA3937_RS10765 overlap by 4 nucleotides
DDA3937_RS10765 and DDA3937_RS10770 are separated by 2 nucleotides
DDA3937_RS10770 and DDA3937_RS10775 are separated by 524 nucleotides
DDA3937_RS10775 and DDA3937_RS10780 are separated by 441 nucleotides
DDA3937_RS10760: DDA3937_RS10760 - paraquat-inducible protein A, at 2,419,754 to 2,420,374
_RS10760
DDA3937_RS10765: DDA3937_RS10765 - MCE family protein, at 2,420,371 to 2,422,041
_RS10765
DDA3937_RS10770: DDA3937_RS10770 - membrane integrity-associated transporter subunit PqiC, at 2,422,044 to 2,422,647
_RS10770
DDA3937_RS10775: DDA3937_RS10775 - TetR/AcrR family transcriptional regulator, at 2,423,172 to 2,423,798
_RS10775
DDA3937_RS10780: DDA3937_RS10780 - TetR family transcriptional regulator, at 2,424,240 to 2,424,800
_RS10780
Group
Condition
DDA3937
_RS10760
DDA3937
_RS10765
DDA3937
_RS10770
DDA3937
_RS10775
DDA3937
_RS10780
control
PDB
-0.5
-0.2
-0.0
-0.9
+0.1
control
PDB
+0.4
-0.1
-0.7
-0.5
-0.6
plant
Stem-Norland
-0.8
+0.2
-0.4
-0.4
+0.0
control
PDB
-0.0
-0.0
-0.7
-1.0
+0.5
control
PDB
+0.5
-0.5
-0.8
-0.3
+0.2
control
PDB
-0.7
+0.1
+0.3
-0.6
-0.0
plant
Stem-Atlantic
-0.8
+0.3
-0.0
+0.3
-0.6
carbon source
M9+sucrose
+0.4
-0.1
+0.1
-0.2
-0.4
plant
Stem-Norland
-0.4
+0.3
-0.2
-0.2
+0.3
plant
Norland
+0.9
-0.5
-0.1
-0.1
-0.3
plant
Norland
+0.3
-0.0
-0.4
+0.3
-0.2
plant
Atlantic
-0.3
+0.0
-0.2
+0.5
+0.3
carbon source
M9+starch
+0.5
+0.0
-0.3
-0.2
+0.2
carbon source
M9+glucose
+0.5
+0.0
+0.2
+0.1
-0.5
carbon source
M9+glycerol
+0.1
-0.1
-0.3
+0.8
-0.0
plant
Stem-Norland
-0.2
+0.3
-0.1
-0.1
+0.6
control
PDB
+0.4
+0.2
-0.5
-0.1
+0.5
plant
Norland
-0.2
-0.0
+0.4
+0.3
+0.4
plant
Norland
+0.8
-0.0
-0.1
-0.1
+0.2
carbon source
M9+glycerol
-0.2
-0.2
-0.2
+1.3
+0.2
carbon source
M9+glycerol
-0.3
+0.1
-0.3
+1.4
+0.0
plant
Stem-Atlantic
-0.3
-0.0
+1.1
+0.0
+0.2
plant
Upstate
+0.5
-0.1
+0.2
+0.4
-0.0
carbon source
M9+glucose+arginine
+0.6
+0.4
+0.3
-0.1
+0.0
carbon source
M9+glycerol
+0.1
+0.1
-0.4
+1.2
+0.2
carbon source
M9+glycerol
+0.2
+0.2
-0.6
+1.0
+0.4
plant
Stem-Norland
+0.3
+0.6
+0.2
-0.1
+0.5
plant
Stem-Atlantic
+0.5
+0.5
+0.1
-0.1
+0.4
carbon source
M9+glycerol
+0.1
+0.1
-0.1
+1.1
+0.3
plant
Upstate
+0.4
+0.1
+0.5
+0.3
+0.5
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