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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS10745 and DDA3937_RS10750 are separated by 380 nucleotides
DDA3937_RS10750 and DDA3937_RS10755 are separated by 131 nucleotides
DDA3937_RS10755 and DDA3937_RS10760 overlap by 8 nucleotides
DDA3937_RS10760 and DDA3937_RS10765 overlap by 4 nucleotides
DDA3937_RS10745: DDA3937_RS10745 - Expansin-YoaJ, at 2,417,247 to 2,417,936
_RS10745
DDA3937_RS10750: DDA3937_RS10750 - DUF3313 domain-containing protein, at 2,418,317 to 2,419,000
_RS10750
DDA3937_RS10755: DDA3937_RS10755 - paraquat-inducible protein A, at 2,419,132 to 2,419,761
_RS10755
DDA3937_RS10760: DDA3937_RS10760 - paraquat-inducible protein A, at 2,419,754 to 2,420,374
_RS10760
DDA3937_RS10765: DDA3937_RS10765 - MCE family protein, at 2,420,371 to 2,422,041
_RS10765
Group
Condition
DDA3937
_RS10745
DDA3937
_RS10750
DDA3937
_RS10755
DDA3937
_RS10760
DDA3937
_RS10765
plant
Stem-Atlantic
-0.0
+0.0
-0.9
-0.8
+0.3
control
PDB
-0.8
+0.1
+0.0
-0.5
-0.2
plant
Upstate
-0.6
+0.0
-0.3
+0.0
-0.3
plant
Stem-Norland
+1.1
+0.0
-1.6
-0.8
+0.2
plant
Atlantic
-0.4
+0.1
-0.3
-0.3
+0.0
carbon source
M9+glucose+arginine
-0.2
+0.1
-0.9
+0.0
+0.1
plant
Upstate
-0.0
+0.1
-0.9
-0.0
-0.1
stress
1.88mM_PTB
-0.4
-0.0
-0.7
+0.3
+0.1
control
PDB
-0.6
+0.1
-0.0
+0.5
-0.5
plant
Upstate
-0.3
+0.0
-0.6
+0.4
-0.1
control
PDB
+0.2
-0.2
-0.8
+0.4
-0.1
carbon source
M9+glycerol
+0.0
+0.2
-0.8
+0.1
+0.1
plant
Stem-Norland
+0.2
-0.3
-0.0
-0.4
+0.3
plant
Upstate
-0.5
-0.1
+0.2
+0.1
+0.2
carbon source
M9+glucose+arginine
-0.3
+0.0
-0.2
+0.5
+0.3
carbon source
M9+glucose
+0.1
+0.0
-0.5
+0.4
+0.2
plant
Stem-Norland
-0.4
+0.0
+0.6
-0.2
+0.3
plant
Norland
+0.1
-0.1
-0.5
+0.8
-0.0
control
PDB
+0.8
+0.0
-0.0
-0.7
+0.1
carbon source
M9+polygalacturonate
-0.0
+0.0
-0.5
+0.7
+0.1
plant
Upstate
+0.3
+0.2
-0.6
+0.4
+0.1
plant
Norland
+0.7
+0.5
-1.3
+0.9
-0.5
carbon source
M9+starch
-0.4
+0.1
+0.2
+0.5
+0.0
control
LB
-0.3
+0.1
+0.4
+0.4
+0.1
control
PDB
+0.0
-0.2
+0.3
+0.4
+0.2
carbon source
M9+glycerol
+0.8
+0.1
+0.6
-0.2
-0.2
carbon source
M9+glucose+arginine
+0.0
+0.0
+0.1
+0.6
+0.4
plant
Norland
+0.1
+0.2
+0.2
+0.8
-0.1
plant
Stem-Norland
-0.1
+0.3
+0.4
+0.3
+0.6
plant
Stem-Atlantic
+0.7
-0.1
+1.7
+0.5
+0.5
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DDA3937_RS10755
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