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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS10705 and DDA3937_RS10710 are separated by 17 nucleotides
DDA3937_RS10710 and DDA3937_RS10715 are separated by 260 nucleotides
DDA3937_RS10715 and DDA3937_RS10720 are separated by 345 nucleotides
DDA3937_RS10720 and DDA3937_RS10725 are separated by 371 nucleotides
DDA3937_RS10705: DDA3937_RS10705 - glycosyl transferase, at 2,409,141 to 2,410,367
_RS10705
DDA3937_RS10710: DDA3937_RS10710 - mannosyl-3-phosphoglycerate phosphatase-related protein, at 2,410,385 to 2,411,218
_RS10710
DDA3937_RS10715: DDA3937_RS10715 - GNAT family N-acetyltransferase, at 2,411,479 to 2,411,931
_RS10715
DDA3937_RS10720: DDA3937_RS10720 - hypothetical protein, at 2,412,277 to 2,412,918
_RS10720
DDA3937_RS10725: DDA3937_RS10725 - acyltransferase family protein, at 2,413,290 to 2,414,294
_RS10725
Group
Condition
DDA3937
_RS10705
DDA3937
_RS10710
DDA3937
_RS10715
DDA3937
_RS10720
DDA3937
_RS10725
control
PDB
-0.4
+0.0
-1.3
-0.2
-2.4
control
PDB
+0.2
+0.7
-0.8
-0.5
-2.8
control
PDB
+0.0
-0.3
-0.3
+0.5
-3.0
control
PDB
+0.1
-0.1
-0.4
+0.2
-2.4
control
PDB
+0.1
-0.1
-0.2
-0.6
-1.1
carbon source
M9+glycerol
-0.5
-0.5
-0.3
-0.1
-0.4
carbon source
M9+glucose
-0.5
-0.0
+0.1
-0.4
-0.7
plant
Atlantic
+0.1
-0.7
-0.0
-0.1
-0.7
carbon source
M9+polygalacturonate
-0.1
-0.3
+0.1
+0.1
-1.2
carbon source
M9+sucrose
-0.0
-0.7
+0.2
-0.1
-0.6
carbon source
M9+starch
+0.0
-0.5
+0.1
-0.3
-0.7
carbon source
M9+glucose+arginine
-0.5
-0.0
+0.4
+0.1
-1.2
stress
1.88mM_PTB
+0.0
+0.2
-0.1
+0.1
-1.3
carbon source
M9+sucrose
-0.1
-0.6
+0.1
+0.2
-0.8
plant
Stem-Norland
+0.4
+0.3
-0.1
+0.3
-2.0
plant
Stem-Atlantic
+0.1
+0.1
-0.0
+0.4
-1.4
carbon source
M9+glucose+arginine
-0.9
-0.1
+0.5
-0.2
-0.2
plant
Atlantic
+0.0
-0.3
-0.7
+1.3
-1.0
plant
Upstate
+0.4
-0.4
+0.1
-0.2
-0.5
plant
Upstate
+0.2
+0.2
-0.1
+0.4
-1.2
plant
Stem-Norland
+0.1
+0.1
+0.5
-0.0
-1.2
carbon source
M9+glycerol
-0.0
-0.3
+0.2
-0.8
+0.4
plant
Upstate
+0.2
-0.3
-0.1
+0.5
-0.8
plant
Atlantic
-0.4
-0.4
-0.6
+0.7
+0.3
carbon source
M9+glucose+arginine
-0.7
+0.3
+0.7
-0.1
-0.4
carbon source
M9+glucose
-0.3
+0.5
+0.4
-0.6
-0.2
plant
Stem-Atlantic
+0.1
+0.3
-0.0
+0.9
-0.9
plant
Atlantic
+0.4
-0.5
-0.1
+0.0
+0.6
plant
Upstate
+0.3
+0.0
-0.1
+1.4
-1.0
plant
Norland
+0.3
-0.3
-0.0
+0.1
+1.4
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