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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS10465 and DDA3937_RS10470 are separated by 17 nucleotides
DDA3937_RS10470 and DDA3937_RS10475 are separated by 8 nucleotides
DDA3937_RS10475 and DDA3937_RS10480 are separated by 19 nucleotides
DDA3937_RS10480 and DDA3937_RS10485 overlap by 1 nucleotides
DDA3937_RS10465: DDA3937_RS10465 - tryptophan synthase subunit beta, at 2,355,617 to 2,356,807
_RS10465
DDA3937_RS10470: DDA3937_RS10470 - bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF, at 2,356,825 to 2,358,210
_RS10470
DDA3937_RS10475: DDA3937_RS10475 - anthranilate phosphoribosyltransferase, at 2,358,219 to 2,359,217
_RS10475
DDA3937_RS10480: DDA3937_RS10480 - glutamine amidotransferase, at 2,359,237 to 2,359,815
_RS10480
DDA3937_RS10485: DDA3937_RS10485 - anthranilate synthase component 1, at 2,359,815 to 2,361,377
_RS10485
Group
Condition
DDA3937
_RS10465
DDA3937
_RS10470
DDA3937
_RS10475
DDA3937
_RS10480
DDA3937
_RS10485
carbon source
M9+polygalacturonate
-4.0
-3.4
-3.9
-4.7
-3.6
carbon source
M9+starch
-3.6
-3.5
-3.5
-5.2
-3.7
carbon source
M9+polygalacturonate
-4.2
-3.3
-4.0
-3.8
-4.0
carbon source
M9+polygalacturonate
-4.3
-3.4
-3.7
-4.0
-3.8
carbon source
M9+sucrose
-4.1
-3.0
-3.2
-3.1
-3.9
carbon source
M9+glucose
-4.0
-2.9
-2.8
-3.4
-3.7
carbon source
M9+starch
-3.7
-3.1
-3.6
-2.8
-3.4
carbon source
M9+starch
-3.4
-3.1
-3.6
-2.9
-3.4
carbon source
M9+sucrose
-4.0
-2.9
-3.9
-1.7
-3.8
carbon source
M9+sucrose
-3.6
-3.0
-3.3
-2.5
-3.5
carbon source
M9+glucose
-3.3
-3.7
-2.9
-1.8
-3.2
plant
Atlantic
-3.0
-3.4
-3.4
-1.9
-3.3
plant
Stem-Atlantic
-3.3
-1.9
-2.3
-3.7
-3.6
plant
Stem-Atlantic
-3.4
-1.7
-2.0
-4.2
-3.4
plant
Stem-Atlantic
-3.4
-1.9
-2.1
-3.9
-3.2
plant
Stem-Atlantic
-3.7
-2.0
-2.0
-3.3
-3.4
plant
Atlantic
-3.0
-3.2
-2.3
-2.5
-2.9
carbon source
M9+glucose+arginine
-2.7
-2.8
-2.8
-2.7
-2.8
plant
Stem-Norland
-3.1
-2.8
-2.4
-2.2
-3.2
control
PDB
-2.4
-2.6
-1.6
-4.6
-2.1
plant
Upstate
-3.4
-2.3
-2.2
-2.3
-2.8
carbon source
M9+glucose
-3.3
-2.3
-2.8
-1.3
-3.0
plant
Atlantic
-3.0
-3.1
-2.8
-0.7
-2.7
carbon source
M9+glucose+arginine
-2.5
-2.4
-2.8
-1.6
-2.7
carbon source
M9+glucose+arginine
-2.5
-2.1
-2.4
-2.4
-2.5
control
PDB
-2.7
-2.1
-1.9
-2.2
-2.5
plant
Stem-Norland
-2.8
-1.5
-0.4
-3.7
-2.8
control
PDB
-2.2
-1.3
-2.5
-2.4
-2.4
plant
Stem-Atlantic
-2.8
-0.2
-1.2
-3.4
-2.3
plant
Atlantic
-2.5
-2.1
-0.4
-2.4
-2.5
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