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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS23165 and DDA3937_RS10375 are separated by 313 nucleotides
DDA3937_RS10375 and DDA3937_RS10380 are separated by 91 nucleotides
DDA3937_RS10380 and DDA3937_RS10385 are separated by 12 nucleotides
DDA3937_RS10385 and DDA3937_RS10390 are separated by 16 nucleotides
DDA3937_RS23165: DDA3937_RS23165 - hypothetical protein, at 2,337,533 to 2,337,907
_RS23165
DDA3937_RS10375: DDA3937_RS10375 - oligopeptide ABC transporter substrate-binding protein OppA, at 2,338,221 to 2,339,864
_RS10375
DDA3937_RS10380: DDA3937_RS10380 - oligopeptide ABC transporter permease OppB, at 2,339,956 to 2,340,876
_RS10380
DDA3937_RS10385: DDA3937_RS10385 - oligopeptide ABC transporter permease OppC, at 2,340,889 to 2,341,797
_RS10385
DDA3937_RS10390: DDA3937_RS10390 - ABC transporter ATP-binding protein, at 2,341,814 to 2,342,803
_RS10390
Group
Condition
DDA3937
_RS23165
DDA3937
_RS10375
DDA3937
_RS10380
DDA3937
_RS10385
DDA3937
_RS10390
stress
3.75mM_PTB
-0.3
-0.6
-0.6
-0.7
-0.8
control
LB
-0.5
-0.6
-0.5
-0.6
-0.6
stress
3.75mM_PTB
-0.3
-0.6
-0.5
-0.6
-0.7
stress
3.75mM_PTB
-0.3
-0.6
-0.5
-0.6
-0.7
carbon source
M9+polygalacturonate
+0.3
+0.8
+0.6
+0.6
+0.6
carbon source
M9+polygalacturonate
+0.3
+0.8
+0.7
+0.6
+0.6
carbon source
M9+starch
+0.3
+0.8
+0.7
+0.7
+0.7
carbon source
M9+starch
+0.4
+0.7
+0.7
+0.7
+0.7
carbon source
M9+starch
+0.4
+0.8
+0.7
+0.6
+0.8
carbon source
M9+glycerol
+0.3
+0.8
+0.9
+0.8
+0.8
carbon source
M9+glycerol
+0.6
+0.9
+0.9
+0.7
+0.7
carbon source
M9+glycerol
+0.5
+0.9
+1.0
+1.0
+0.8
carbon source
M9+sucrose
+0.4
+1.1
+1.0
+1.0
+1.1
carbon source
M9+sucrose
+0.5
+1.1
+1.1
+1.0
+1.0
carbon source
M9+sucrose
+0.6
+1.1
+1.0
+0.9
+1.1
carbon source
M9+glycerol
+0.5
+1.1
+1.1
+1.0
+1.1
carbon source
M9+glycerol
+0.5
+1.1
+1.1
+1.1
+1.0
carbon source
M9+glycerol
+0.8
+1.3
+1.3
+1.2
+1.2
carbon source
M9+glucose
+1.6
+2.7
+2.6
+2.5
+2.6
carbon source
M9+glucose
+1.6
+2.7
+2.7
+2.6
+2.7
carbon source
M9+glucose
+1.9
+2.9
+2.8
+2.8
+2.9
carbon source
M9+glucose+arginine
+2.0
+3.5
+3.3
+3.2
+3.4
carbon source
M9+glucose+arginine
+2.0
+3.5
+3.3
+3.3
+3.4
carbon source
M9+glucose+arginine
+2.1
+3.5
+3.3
+3.3
+3.5
control
PDB
+2.6
+3.3
+3.3
+3.3
+3.4
control
PDB
+2.4
+3.3
+3.4
+3.3
+3.4
control
PDB
+2.8
+3.4
+3.5
+3.4
+3.4
control
PDB
+2.9
+3.4
+3.6
+3.5
+3.7
control
PDB
+2.8
+3.6
+3.9
+3.7
+3.9
control
PDB
+3.0
+3.6
+3.8
+3.7
+3.9
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DDA3937_RS23165
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DDA3937_RS10380
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