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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS10355 and DDA3937_RS10360 are separated by 570 nucleotides
DDA3937_RS10360 and DDA3937_RS10370 are separated by 547 nucleotides
DDA3937_RS10370 and DDA3937_RS23165 are separated by 186 nucleotides
DDA3937_RS23165 and DDA3937_RS10375 are separated by 313 nucleotides
DDA3937_RS10355: DDA3937_RS10355 - thymidine kinase, at 2,332,282 to 2,332,881
_RS10355
DDA3937_RS10360: DDA3937_RS10360 - bifunctional acetaldehyde-CoA/alcohol dehydrogenase, at 2,333,452 to 2,336,154
_RS10360
DDA3937_RS10370: DDA3937_RS10370 - YchE family NAAT transporter, at 2,336,702 to 2,337,346
_RS10370
DDA3937_RS23165: DDA3937_RS23165 - hypothetical protein, at 2,337,533 to 2,337,907
_RS23165
DDA3937_RS10375: DDA3937_RS10375 - oligopeptide ABC transporter substrate-binding protein OppA, at 2,338,221 to 2,339,864
_RS10375
Group
Condition
DDA3937
_RS10355
DDA3937
_RS10360
DDA3937
_RS10370
DDA3937
_RS23165
DDA3937
_RS10375
stress
3.75mM_PTB
-0.4
-0.0
-0.9
-0.3
-0.5
carbon source
M9+polygalacturonate
-0.0
+0.1
-1.1
+0.2
+0.7
carbon source
M9+glycerol
-0.3
+0.1
-1.4
+0.5
+0.9
plant
Atlantic
+0.1
+0.2
-0.9
+0.4
+0.5
carbon source
M9+glycerol
-0.2
-0.0
-1.1
+0.5
+1.1
carbon source
M9+sucrose
+0.1
-0.0
-1.3
+0.6
+1.1
carbon source
M9+glycerol
-0.2
+0.1
-0.9
+0.6
+0.9
plant
Stem-Norland
+0.4
+0.1
-0.7
+0.4
+0.4
plant
Atlantic
-0.0
+0.6
-0.7
+0.3
+0.5
carbon source
M9+glycerol
+0.4
+0.1
-0.8
+0.3
+0.8
plant
Atlantic
+0.3
+0.2
-0.6
+0.7
+0.4
carbon source
M9+glycerol
-0.1
+0.0
-0.5
+0.5
+1.1
carbon source
M9+sucrose
+0.2
-0.1
-0.4
+0.4
+1.1
plant
Stem-Norland
+1.1
+0.4
-1.0
+0.2
+0.6
plant
Atlantic
+0.3
+0.2
-0.3
+0.9
+0.4
plant
Upstate
+0.0
+0.9
-0.3
+0.6
+0.4
carbon source
M9+glycerol
-0.1
+0.1
-0.1
+0.8
+1.3
plant
Norland
+0.7
+0.2
+0.7
+0.3
+0.1
carbon source
M9+glucose
-0.4
+0.3
-0.3
+1.6
+2.7
carbon source
M9+glucose
-0.1
+0.0
-0.4
+1.6
+2.7
carbon source
M9+glucose
-0.1
+0.2
-0.9
+1.9
+2.9
control
PDB
+0.2
-0.0
-1.4
+2.6
+3.3
carbon source
M9+glucose+arginine
-0.1
+0.2
-1.0
+2.0
+3.5
carbon source
M9+glucose+arginine
+0.1
-0.0
-0.5
+2.0
+3.5
carbon source
M9+glucose+arginine
+0.1
+0.0
-0.7
+2.1
+3.5
control
PDB
+0.6
-0.3
-0.5
+2.4
+3.3
control
PDB
+0.7
-0.3
-1.5
+3.0
+3.6
control
PDB
+0.2
-0.1
-0.5
+2.8
+3.4
control
PDB
+0.2
-0.0
-0.2
+2.9
+3.4
control
PDB
-0.1
-0.1
+0.1
+2.8
+3.6
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DDA3937_RS10370
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