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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS09705 and DDA3937_RS09710 overlap by 7 nucleotides
DDA3937_RS09710 and DDA3937_RS09715 overlap by 19 nucleotides
DDA3937_RS09715 and DDA3937_RS09720 are separated by 6 nucleotides
DDA3937_RS09720 and DDA3937_RS09725 overlap by 1 nucleotides
DDA3937_RS09705: DDA3937_RS09705 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE, at 2,191,875 to 2,192,489
_RS09705
DDA3937_RS09710: DDA3937_RS09710 - imidazole glycerol phosphate synthase subunit HisF, at 2,192,483 to 2,193,259
_RS09710
DDA3937_RS09715: DDA3937_RS09715 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 2,193,241 to 2,193,978
_RS09715
DDA3937_RS09720: DDA3937_RS09720 - imidazole glycerol phosphate synthase subunit HisH, at 2,193,985 to 2,194,575
_RS09720
DDA3937_RS09725: DDA3937_RS09725 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB, at 2,194,575 to 2,195,642
_RS09725
Group
Condition
DDA3937
_RS09705
DDA3937
_RS09710
DDA3937
_RS09715
DDA3937
_RS09720
DDA3937
_RS09725
carbon source
M9+polygalacturonate
-3.4
-5.0
-4.7
-4.3
-4.9
carbon source
M9+polygalacturonate
-4.2
-4.5
-4.3
-4.3
-4.6
carbon source
M9+polygalacturonate
-4.0
-3.8
-4.6
-4.0
-4.6
carbon source
M9+sucrose
-3.9
-4.6
-4.7
-3.5
-4.0
carbon source
M9+glucose
-3.2
-4.6
-3.8
-3.8
-4.6
carbon source
M9+sucrose
-3.7
-3.4
-3.8
-4.4
-4.1
carbon source
M9+starch
-3.4
-4.0
-4.6
-3.7
-3.6
carbon source
M9+glucose
-3.5
-3.7
-3.9
-4.1
-4.1
carbon source
M9+glucose
-3.3
-4.3
-3.9
-3.3
-4.3
carbon source
M9+starch
-3.9
-4.0
-3.2
-4.0
-4.0
carbon source
M9+starch
-3.6
-3.7
-4.2
-3.5
-3.7
carbon source
M9+sucrose
-2.6
-3.8
-4.0
-3.7
-2.9
carbon source
M9+glucose+arginine
-3.4
-2.9
-4.0
-3.0
-2.8
carbon source
M9+glucose+arginine
-3.9
-3.2
-1.3
-3.4
-3.4
carbon source
M9+glycerol
-2.8
-3.0
-2.1
-3.2
-3.5
carbon source
M9+glucose+arginine
-3.4
-2.5
-2.8
-3.1
-2.6
carbon source
M9+glycerol
-2.8
-3.3
-1.9
-2.8
-2.7
carbon source
M9+glycerol
-2.3
-3.0
-2.0
-3.4
-2.6
carbon source
M9+glycerol
-2.0
-2.5
-2.3
-2.9
-3.2
carbon source
M9+glycerol
-2.7
-2.2
-1.8
-2.5
-2.5
carbon source
M9+glycerol
-2.5
-1.9
-1.0
-1.6
-2.3
plant
Atlantic
-0.7
-1.1
-0.5
-1.3
-0.7
plant
Stem-Atlantic
-0.6
-1.0
-1.5
-0.7
-0.5
plant
Stem-Atlantic
-0.3
-0.9
-1.2
-1.1
-0.5
plant
Atlantic
-0.5
-0.6
-1.1
-0.6
-1.1
plant
Stem-Norland
-0.7
-0.4
-1.4
-0.7
-0.2
plant
Stem-Atlantic
-0.6
-1.1
-0.8
-0.4
-0.4
plant
Atlantic
+0.5
-0.6
-1.7
-0.6
-0.4
plant
Stem-Atlantic
-0.7
-1.1
+1.3
-0.3
-0.5
control
PDB
+0.5
-0.6
+0.9
-1.0
+0.7
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