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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS09520 and DDA3937_RS09525 overlap by 4 nucleotides
DDA3937_RS09525 and DDA3937_RS09530 are separated by 56 nucleotides
DDA3937_RS09530 and DDA3937_RS09535 are separated by 418 nucleotides
DDA3937_RS09535 and DDA3937_RS09540 are separated by 59 nucleotides
DDA3937_RS09520: DDA3937_RS09520 - heavy metal-binding domain-containing protein, at 2,143,488 to 2,143,814
_RS09520
DDA3937_RS09525: DDA3937_RS09525 - N-acetylmuramoyl-L-alanine amidase, at 2,143,811 to 2,144,683
_RS09525
DDA3937_RS09530: DDA3937_RS09530 - DUF2867 domain-containing protein, at 2,144,740 to 2,146,206
_RS09530
DDA3937_RS09535: DDA3937_RS09535 - NADH oxidoreductase, at 2,146,625 to 2,147,632
_RS09535
DDA3937_RS09540: DDA3937_RS09540 - hydroxylamine reductase, at 2,147,692 to 2,149,344
_RS09540
Group
Condition
DDA3937
_RS09520
DDA3937
_RS09525
DDA3937
_RS09530
DDA3937
_RS09535
DDA3937
_RS09540
control
PDB
-1.2
+0.0
+0.3
-0.2
-0.5
carbon source
M9+glucose
+0.1
-0.2
-1.2
+0.0
-0.1
carbon source
M9+glycerol
-0.9
+0.0
-0.2
-0.0
-0.1
plant
Stem-Atlantic
-1.2
-0.4
+0.3
-0.0
+0.2
plant
Stem-Norland
-0.9
-0.5
+0.2
+0.0
+0.0
carbon source
M9+glucose
+0.1
-0.1
-1.2
+0.2
-0.1
carbon source
M9+glucose+arginine
-0.0
-0.1
-0.8
+0.1
-0.2
carbon source
M9+glucose
-0.1
+0.2
-1.0
+0.2
-0.1
carbon source
M9+sucrose
-0.2
-0.1
-0.5
+0.1
-0.1
plant
Stem-Atlantic
-0.4
-0.3
+0.2
-0.3
+0.1
control
LB
-0.6
-0.2
+0.1
+0.1
+0.1
control
PDB
-1.0
-0.0
+0.4
+0.1
+0.1
plant
Upstate
+0.2
-0.6
-0.1
-0.0
+0.1
carbon source
M9+glucose+arginine
+0.7
-0.2
-0.8
+0.2
-0.1
plant
Stem-Atlantic
+0.5
-0.5
+0.4
-0.2
-0.2
plant
Stem-Norland
+0.9
-0.3
+0.2
-0.5
-0.1
plant
Upstate
+0.7
-0.3
+0.0
-0.1
-0.0
plant
Stem-Norland
+0.2
-0.3
+0.3
+0.2
+0.0
control
PDB
+0.7
-0.5
+0.1
-0.0
+0.1
plant
Stem-Norland
+1.0
-0.3
+0.1
-0.2
-0.2
carbon source
M9+glucose+arginine
+0.7
+0.1
-0.4
+0.2
-0.0
plant
Stem-Atlantic
+1.1
-0.4
+0.3
-0.0
-0.2
plant
Atlantic
+0.4
+0.3
-0.2
+0.2
+0.2
plant
Atlantic
+1.0
-0.1
-0.0
+0.2
-0.0
plant
Norland
+0.2
+0.1
+0.4
-0.1
+0.6
plant
Norland
+0.5
+0.0
-0.2
+0.6
+0.2
plant
Upstate
+1.0
-0.2
+0.2
+0.3
+0.2
plant
Atlantic
+0.8
+0.5
+0.1
+0.2
-0.0
plant
Atlantic
+1.8
-0.6
+0.1
+0.4
+0.2
control
PDB
+0.9
+0.3
+0.2
+0.6
+0.1
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DDA3937_RS09530
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