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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS09355 and DDA3937_RS09360 are separated by 775 nucleotides
DDA3937_RS09360 and DDA3937_RS09365 are separated by 367 nucleotides
DDA3937_RS09365 and DDA3937_RS09370 are separated by 188 nucleotides
DDA3937_RS09370 and DDA3937_RS09375 are separated by 148 nucleotides
DDA3937_RS09355: DDA3937_RS09355 - Tar ligand binding domain-containing protein, at 2,106,410 to 2,108,071
_RS09355
DDA3937_RS09360: DDA3937_RS09360 - Tar ligand binding domain-containing protein, at 2,108,847 to 2,110,508
_RS09360
DDA3937_RS09365: DDA3937_RS09365 - Tar ligand binding domain-containing protein, at 2,110,876 to 2,112,561
_RS09365
DDA3937_RS09370: DDA3937_RS09370 - GTP cyclohydrolase I FolE, at 2,112,750 to 2,113,418
_RS09370
DDA3937_RS09375: DDA3937_RS09375 - DUF418 family protein, at 2,113,567 to 2,114,715
_RS09375
Group
Condition
DDA3937
_RS09355
DDA3937
_RS09360
DDA3937
_RS09365
DDA3937
_RS09370
DDA3937
_RS09375
plant
Stem-Norland
-0.0
+0.1
-0.3
-4.0
-0.1
carbon source
M9+glycerol
-0.3
+0.1
+0.3
-2.9
-0.1
carbon source
M9+starch
-0.1
-0.0
-0.1
-1.8
-0.3
control
PDB
-0.1
-0.3
-0.2
-1.2
-0.3
plant
Upstate
-0.1
-0.0
-0.2
-1.4
-0.4
plant
Norland
+0.4
-0.1
-0.2
-1.9
-0.2
plant
Stem-Atlantic
-0.1
-0.1
+0.1
-1.7
+0.0
control
PDB
+0.2
-0.2
+0.1
-1.4
-0.0
plant
Atlantic
-0.3
-0.3
-0.1
-0.6
+0.0
plant
Atlantic
-0.2
+0.1
+0.3
-0.6
-0.7
plant
Stem-Norland
-0.1
-0.1
+0.2
-1.1
+0.1
plant
Atlantic
-0.1
+0.1
+0.1
-0.8
-0.1
control
PDB
+0.1
-0.4
-0.2
-0.7
+0.4
plant
Atlantic
+0.1
+0.1
+0.4
-1.4
+0.0
plant
Upstate
-0.1
+0.2
-0.0
-0.8
-0.1
plant
Stem-Norland
+0.1
-0.1
-0.1
-1.0
+0.3
carbon source
M9+starch
-0.1
-0.0
+0.3
-0.7
-0.2
carbon source
M9+glucose
+0.1
+0.1
+0.2
-1.0
+0.1
plant
Norland
+0.2
+0.1
-0.1
-0.7
+0.2
plant
Upstate
+0.0
+0.4
+0.2
-0.6
-0.2
plant
Stem-Atlantic
-0.3
-0.4
-0.3
+0.8
+0.3
carbon source
M9+glycerol
+0.4
+0.2
+0.3
-0.7
-0.1
control
PDB
-0.6
-0.1
-0.3
+1.1
+0.4
plant
Norland
-0.2
-0.1
+0.4
+0.7
-0.3
plant
Stem-Atlantic
+0.3
-0.3
+0.4
-0.2
+0.4
plant
Norland
-0.3
+0.2
+0.2
+0.5
+0.2
stress
1.88mM_PTB
+0.0
-0.0
-0.1
+1.1
-0.1
control
PDB
+0.4
-0.1
-0.3
+0.4
+0.5
carbon source
M9+glycerol
+0.2
-0.0
+0.3
+1.0
+0.2
plant
Stem-Norland
+0.6
+0.6
+0.1
+0.2
+0.4
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