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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS08875 and DDA3937_RS08880 are separated by 169 nucleotides
DDA3937_RS08880 and DDA3937_RS08885 are separated by 369 nucleotides
DDA3937_RS08885 and DDA3937_RS23130 are separated by 94 nucleotides
DDA3937_RS23130 and DDA3937_RS08890 are separated by 307 nucleotides
DDA3937_RS08875: DDA3937_RS08875 - allantoin permease, at 2,004,681 to 2,005,984
_RS08875
DDA3937_RS08880: DDA3937_RS08880 - Hsp20 family protein, at 2,006,154 to 2,006,642
_RS08880
DDA3937_RS08885: DDA3937_RS08885 - hypothetical protein, at 2,007,012 to 2,007,389
_RS08885
DDA3937_RS23130: DDA3937_RS23130 - hypothetical protein, at 2,007,484 to 2,007,891
_RS23130
DDA3937_RS08890: DDA3937_RS08890 - hypothetical protein, at 2,008,199 to 2,008,573
_RS08890
Group
Condition
DDA3937
_RS08875
DDA3937
_RS08880
DDA3937
_RS08885
DDA3937
_RS23130
DDA3937
_RS08890
control
PDB
-0.2
+0.0
-2.1
N.D.
N.D.
plant
Upstate
+0.1
-0.2
-1.8
N.D.
N.D.
control
PDB
-0.1
-0.5
-0.8
N.D.
N.D.
control
PDB
+0.1
-0.8
-0.2
N.D.
N.D.
plant
Stem-Norland
-0.3
+0.1
-0.7
N.D.
N.D.
control
LB
-0.0
-0.1
-0.7
N.D.
N.D.
control
LB
+0.1
-0.2
-0.5
N.D.
N.D.
control
PDB
+0.2
-0.3
-0.4
N.D.
N.D.
stress
3.75mM_PTB
+0.1
-0.2
-0.4
N.D.
N.D.
carbon source
M9+glycerol
-0.2
+0.2
-0.4
N.D.
N.D.
plant
Norland
+0.1
-0.4
-0.2
N.D.
N.D.
plant
Upstate
+0.1
+0.2
-0.5
N.D.
N.D.
plant
Stem-Norland
+0.1
+0.2
-0.4
N.D.
N.D.
carbon source
M9+polygalacturonate
-0.1
+0.4
-0.3
N.D.
N.D.
plant
Norland
-0.1
-0.2
+0.4
N.D.
N.D.
carbon source
M9+glucose+arginine
+0.2
+0.5
-0.6
N.D.
N.D.
plant
Stem-Atlantic
+0.1
-0.6
+0.7
N.D.
N.D.
carbon source
M9+sucrose
+0.0
+0.5
-0.3
N.D.
N.D.
plant
Atlantic
+0.1
+0.4
+0.2
N.D.
N.D.
control
PDB
-0.2
+0.5
+0.3
N.D.
N.D.
carbon source
M9+glucose
+0.1
+0.4
+0.2
N.D.
N.D.
carbon source
M9+sucrose
+0.1
+0.5
+0.1
N.D.
N.D.
plant
Norland
+0.1
-0.2
+0.7
N.D.
N.D.
carbon source
M9+starch
+0.0
+0.6
+0.0
N.D.
N.D.
plant
Upstate
-0.0
-0.4
+1.2
N.D.
N.D.
plant
Stem-Atlantic
-0.2
+0.7
+0.5
N.D.
N.D.
plant
Atlantic
+0.1
+0.6
+0.2
N.D.
N.D.
plant
Norland
+0.3
+0.1
+0.5
N.D.
N.D.
carbon source
M9+glucose+arginine
+0.0
+0.5
+0.4
N.D.
N.D.
plant
Stem-Atlantic
+0.1
+0.0
+1.1
N.D.
N.D.
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DDA3937_RS08885
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