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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS08820 and DDA3937_RS08825 are separated by 370 nucleotides
DDA3937_RS08825 and DDA3937_RS08830 are separated by 152 nucleotides
DDA3937_RS08830 and DDA3937_RS08835 are separated by 29 nucleotides
DDA3937_RS08835 and DDA3937_RS08840 are separated by 97 nucleotides
DDA3937_RS08820: DDA3937_RS08820 - threonine/homoserine exporter RhtA, at 1,993,932 to 1,994,816
_RS08820
DDA3937_RS08825: DDA3937_RS08825 - outer membrane protein OmpX, at 1,995,187 to 1,995,702
_RS08825
DDA3937_RS08830: DDA3937_RS08830 - IS4 family transposase, at 1,995,855 to 1,997,171
_RS08830
DDA3937_RS08835: DDA3937_RS08835 - MarR family transcriptional regulator, at 1,997,201 to 1,997,695
_RS08835
DDA3937_RS08840: DDA3937_RS08840 - MFS transporter, at 1,997,793 to 1,998,974
_RS08840
Group
Condition
DDA3937
_RS08820
DDA3937
_RS08825
DDA3937
_RS08830
DDA3937
_RS08835
DDA3937
_RS08840
plant
Atlantic
-0.5
-0.2
-0.1
-0.4
+0.1
plant
Upstate
-0.2
-0.6
-0.1
-0.2
+0.2
plant
Stem-Atlantic
-0.3
-0.7
+0.1
-0.1
+0.2
carbon source
M9+glycerol
-0.1
+0.1
-0.0
-0.3
-0.5
plant
Atlantic
+0.2
-0.7
-0.2
-0.2
+0.1
plant
Stem-Atlantic
+0.2
-0.6
+0.2
-0.1
-0.3
stress
3.75mM_PTB
+0.2
-0.2
-0.2
-0.3
-0.1
plant
Norland
+0.1
-0.3
+0.0
-0.6
+0.2
plant
Atlantic
-0.2
-0.4
+0.0
+0.2
-0.2
plant
Norland
+0.3
-0.4
-0.3
-0.0
-0.0
carbon source
M9+glucose+arginine
-0.3
+0.5
-0.1
-0.6
+0.2
carbon source
M9+glucose+arginine
-0.0
+0.4
-0.1
-0.5
-0.1
plant
Norland
-0.3
-0.3
+0.2
-0.1
+0.2
carbon source
M9+sucrose
-0.1
+0.2
-0.1
-0.5
+0.2
plant
Norland
+0.3
-0.4
-0.2
-0.0
+0.2
control
PDB
+0.6
-0.1
-0.4
+0.1
-0.2
plant
Stem-Norland
+0.2
-0.4
-0.1
+0.0
+0.3
plant
Upstate
+0.4
-0.0
-0.3
-0.4
+0.2
carbon source
M9+sucrose
-0.1
+0.4
-0.1
-0.5
+0.3
carbon source
M9+glucose+arginine
+0.1
+0.3
-0.1
-0.5
+0.1
carbon source
M9+glucose
-0.2
+0.8
+0.1
-0.8
+0.2
carbon source
M9+glucose
-0.0
+0.6
-0.1
-0.7
+0.3
plant
Stem-Norland
+0.4
-0.5
+0.3
+0.1
-0.0
carbon source
M9+glucose
-0.1
+0.6
+0.1
-0.5
+0.2
plant
Norland
+0.2
-0.3
+0.2
-0.1
+0.3
carbon source
M9+sucrose
-0.0
+0.6
+0.2
-0.5
+0.2
control
PDB
+0.6
+0.0
+0.4
+0.0
-0.2
control
PDB
+0.8
-0.4
+0.1
+0.6
+0.0
plant
Upstate
+0.5
-0.2
+0.2
+0.0
+0.5
control
PDB
-0.1
+1.0
+0.0
-0.0
+0.3
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