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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS08535 and DDA3937_RS08540 are separated by 3 nucleotides
DDA3937_RS08540 and DDA3937_RS08545 are separated by 616 nucleotides
DDA3937_RS08545 and DDA3937_RS08550 are separated by 1 nucleotides
DDA3937_RS08550 and DDA3937_RS08555 are separated by 47 nucleotides
DDA3937_RS08535: DDA3937_RS08535 - glyoxalase/bleomycin resistance/dioxygenase family protein, at 1,930,528 to 1,930,959
_RS08535
DDA3937_RS08540: DDA3937_RS08540 - uridine diphosphate-N-acetylglucosamine-binding protein YvcK, at 1,930,963 to 1,931,883
_RS08540
DDA3937_RS08545: DDA3937_RS08545 - cytochrome ubiquinol oxidase subunit I, at 1,932,500 to 1,933,915
_RS08545
DDA3937_RS08550: DDA3937_RS08550 - cytochrome d ubiquinol oxidase subunit II, at 1,933,917 to 1,934,924
_RS08550
DDA3937_RS08555: DDA3937_RS08555 - DUF2474 domain-containing protein, at 1,934,972 to 1,935,118
_RS08555
Group
Condition
DDA3937
_RS08535
DDA3937
_RS08540
DDA3937
_RS08545
DDA3937
_RS08550
DDA3937
_RS08555
control
PDB
-0.5
-0.0
-0.4
-0.1
-1.4
control
PDB
-1.7
+0.3
-0.6
+0.4
-0.7
carbon source
M9+glucose+arginine
+0.3
-0.7
-0.0
+0.3
-1.7
plant
Stem-Norland
-0.8
+0.4
-0.1
-0.4
-0.8
carbon source
M9+polygalacturonate
-0.3
-0.5
-0.3
+0.2
-0.9
plant
Atlantic
-0.4
-0.6
-0.2
-0.2
-0.3
plant
Atlantic
+0.1
-0.0
+0.1
-0.2
-1.7
carbon source
M9+glucose
-0.5
-0.5
+0.1
+0.1
-0.5
plant
Norland
-0.9
+0.0
+0.1
+0.1
-0.4
carbon source
M9+glucose
+0.6
-0.1
-0.1
+0.3
-1.7
plant
Upstate
-0.5
-0.3
+0.1
+0.1
-0.4
carbon source
M9+glucose+arginine
+0.2
-0.4
-0.1
+0.4
-1.1
stress
3.75mM_PTB
-0.1
+0.2
-0.1
-0.1
-0.9
carbon source
M9+glycerol
+0.2
-0.2
+0.3
-0.4
-0.9
carbon source
M9+glycerol
-0.2
-0.7
+0.2
+0.1
-0.4
plant
Stem-Atlantic
-0.8
+0.7
-0.2
-0.0
-0.5
carbon source
M9+glycerol
+0.1
-0.5
-0.1
+0.4
-0.7
carbon source
M9+glycerol
-0.9
-0.0
+0.1
-0.3
+0.3
plant
Norland
-0.0
-0.3
+0.3
+0.7
-1.3
plant
Stem-Atlantic
+0.2
-0.4
+0.1
+0.1
-0.7
plant
Norland
+0.1
+0.5
-0.3
+0.1
-0.9
carbon source
M9+starch
+0.2
+0.3
-0.0
+0.1
-1.1
plant
Stem-Norland
+0.4
-0.7
+0.3
+0.1
-0.1
plant
Upstate
-0.1
+1.3
-0.0
-0.2
-0.7
plant
Norland
+1.3
-1.1
+0.2
-0.2
+0.1
plant
Atlantic
+0.2
+0.0
-0.4
+0.0
+1.3
plant
Atlantic
-0.5
+0.2
+0.5
-0.2
+1.3
control
PDB
-0.1
-0.1
+0.2
+0.4
+0.8
control
PDB
+0.1
+0.2
-0.7
+0.6
+1.3
plant
Atlantic
+0.0
+0.6
+0.4
-0.0
+1.2
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