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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS08485 and DDA3937_RS08490 are separated by 230 nucleotides
DDA3937_RS08490 and DDA3937_RS08495 overlap by 1 nucleotides
DDA3937_RS08495 and DDA3937_RS08500 are separated by 146 nucleotides
DDA3937_RS08500 and DDA3937_RS08505 are separated by 777 nucleotides
DDA3937_RS08485: DDA3937_RS08485 - cytidine deaminase, at 1,917,550 to 1,918,437
_RS08485
DDA3937_RS08490: DDA3937_RS08490 - CidB/LrgB family autolysis modulator, at 1,918,668 to 1,919,366
_RS08490
DDA3937_RS08495: DDA3937_RS08495 - CidA/LrgA family protein, at 1,919,366 to 1,919,776
_RS08495
DDA3937_RS08500: DDA3937_RS08500 - glycoside hydrolase family 3 protein, at 1,919,923 to 1,921,899
_RS08500
DDA3937_RS08505: DDA3937_RS08505 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 1,922,677 to 1,923,960
_RS08505
Group
Condition
DDA3937
_RS08485
DDA3937
_RS08490
DDA3937
_RS08495
DDA3937
_RS08500
DDA3937
_RS08505
plant
Atlantic
-0.4
-0.1
-0.3
-0.1
-0.4
plant
Upstate
-0.4
+0.0
-0.4
-0.1
-0.1
carbon source
M9+glucose+arginine
-0.1
-0.4
-0.1
+0.2
-0.5
plant
Norland
-0.3
-0.5
+0.3
+0.0
-0.3
carbon source
M9+sucrose
+0.2
-0.4
-0.2
+0.0
-0.3
plant
Norland
-0.4
+0.2
-0.3
+0.0
-0.1
plant
Stem-Norland
-0.7
+0.7
+0.1
-0.2
-0.5
plant
Stem-Atlantic
-0.3
-0.2
-0.2
+0.3
-0.1
plant
Stem-Atlantic
+0.1
+0.2
+0.0
+0.1
-0.8
plant
Stem-Norland
+0.0
+0.4
-0.2
+0.1
-0.5
plant
Norland
-0.6
+0.2
-0.0
+0.2
+0.1
plant
Upstate
-0.5
-0.2
+0.2
+0.1
+0.2
carbon source
M9+glycerol
+0.4
-0.5
+0.0
-0.1
+0.1
carbon source
M9+glucose
-0.2
+0.0
+0.4
+0.2
-0.3
control
PDB
-0.5
+0.6
-0.2
+0.2
+0.2
control
PDB
-0.3
+0.5
+0.0
+0.1
-0.1
plant
Stem-Atlantic
-0.2
+0.9
+0.2
-0.1
-0.5
plant
Stem-Atlantic
+0.5
-0.8
+0.7
-0.0
-0.1
control
LB
+0.2
-0.3
-0.0
+0.2
+0.2
plant
Upstate
-0.3
+0.9
-0.5
+0.2
+0.0
plant
Stem-Norland
+0.2
+0.2
+0.2
+0.3
-0.5
plant
Stem-Norland
-0.4
+0.4
+0.2
+0.3
-0.1
plant
Stem-Norland
+0.3
-0.4
-0.0
+0.4
+0.4
stress
7.5mM_PTB
+0.3
+0.3
+0.3
+0.0
-0.2
plant
Upstate
-0.0
+0.4
+0.3
+0.2
+0.1
control
PDB
-0.1
+0.5
+0.4
+0.2
+0.1
control
PDB
-0.1
+0.9
+0.0
-0.1
+0.2
plant
Atlantic
-0.0
+0.2
+0.2
+0.1
+0.5
plant
Atlantic
-0.3
+0.2
+0.2
-0.2
+1.2
control
PDB
+0.4
+0.3
+0.5
+0.1
+0.4
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DDA3937_RS08495
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