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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS08280 and DDA3937_RS08285 are separated by 189 nucleotides
DDA3937_RS08285 and DDA3937_RS08290 are separated by 313 nucleotides
DDA3937_RS08290 and DDA3937_RS08295 are separated by 201 nucleotides
DDA3937_RS08295 and DDA3937_RS08300 are separated by 90 nucleotides
DDA3937_RS08280: DDA3937_RS08280 - RhsIA family immunity protein, at 1,872,626 to 1,873,036
_RS08280
DDA3937_RS08285: DDA3937_RS08285 - pyridoxamine 5'-phosphate oxidase family protein, at 1,873,226 to 1,874,470
_RS08285
DDA3937_RS08290: DDA3937_RS08290 - VOC family protein, at 1,874,784 to 1,875,176
_RS08290
DDA3937_RS08295: DDA3937_RS08295 - alpha/beta hydrolase, at 1,875,378 to 1,876,295
_RS08295
DDA3937_RS08300: DDA3937_RS08300 - ABATE domain-containing protein, at 1,876,386 to 1,876,961
_RS08300
Group
Condition
DDA3937
_RS08280
DDA3937
_RS08285
DDA3937
_RS08290
DDA3937
_RS08295
DDA3937
_RS08300
control
PDB
-2.0
-0.3
-1.0
-0.1
-0.1
plant
Stem-Atlantic
-1.2
+0.8
-0.8
-0.1
-0.2
plant
Stem-Norland
-0.8
-0.2
-0.2
+0.1
-0.4
control
PDB
+0.3
-0.4
-0.4
-0.0
-0.8
plant
Upstate
-0.6
-0.2
-0.5
+0.1
-0.1
control
PDB
-0.7
+0.5
-1.4
+0.1
+0.3
control
PDB
-0.7
+0.3
-0.7
+0.2
-0.3
plant
Stem-Atlantic
-0.5
-0.3
-0.4
+0.1
+0.0
plant
Norland
-0.3
-0.4
+0.1
-0.1
-0.5
plant
Upstate
-0.6
+0.0
-0.7
+0.2
+0.2
carbon source
M9+polygalacturonate
+0.3
-0.1
-0.7
-0.2
-0.1
plant
Stem-Norland
-0.8
+0.3
-0.1
+0.1
-0.3
stress
3.75mM_PTB
-0.7
+0.1
-0.3
+0.0
+0.2
plant
Atlantic
-0.6
+0.2
-0.5
+0.2
-0.0
plant
Stem-Norland
-0.6
+0.1
+0.3
-0.1
-0.2
plant
Stem-Atlantic
-0.2
+0.4
-0.6
-0.0
-0.1
plant
Atlantic
-0.5
+0.0
+0.4
-0.1
-0.3
carbon source
M9+starch
+0.3
+0.1
-0.6
+0.1
-0.3
carbon source
M9+glucose
+0.7
-0.1
-0.4
-0.1
-0.5
plant
Norland
-0.9
+0.1
+0.4
+0.0
+0.1
carbon source
M9+glycerol
+0.2
-0.6
+0.3
-0.1
-0.2
plant
Stem-Norland
-0.9
+0.1
+0.8
+0.1
-0.3
control
PDB
-0.5
+0.1
+0.4
-0.2
-0.0
control
PDB
+0.8
-0.4
-0.6
-0.2
+0.3
plant
Norland
-0.4
-0.1
-0.1
-0.0
+0.6
plant
Upstate
-0.3
-0.1
+0.7
-0.0
+0.3
plant
Atlantic
-0.3
+0.0
+0.7
-0.1
+0.3
plant
Upstate
+0.6
-0.1
+0.4
+0.1
+0.1
plant
Stem-Norland
+0.4
+0.3
+0.9
+0.0
-0.5
plant
Norland
-0.5
+0.6
-0.1
+0.5
+1.1
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