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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS08185 and DDA3937_RS08190 are separated by 138 nucleotides
DDA3937_RS08190 and DDA3937_RS08195 are separated by 293 nucleotides
DDA3937_RS08195 and DDA3937_RS08200 are separated by 88 nucleotides
DDA3937_RS08200 and DDA3937_RS08205 are separated by 53 nucleotides
DDA3937_RS08185: DDA3937_RS08185 - alpha/beta hydrolase, at 1,853,150 to 1,854,241
_RS08185
DDA3937_RS08190: DDA3937_RS08190 - iron-containing alcohol dehydrogenase, at 1,854,380 to 1,855,528
_RS08190
DDA3937_RS08195: DDA3937_RS08195 - AraC family transcriptional regulator, at 1,855,822 to 1,856,787
_RS08195
DDA3937_RS08200: DDA3937_RS08200 - hypothetical protein, at 1,856,876 to 1,857,301
_RS08200
DDA3937_RS08205: DDA3937_RS08205 - DMT family transporter, at 1,857,355 to 1,858,272
_RS08205
Group
Condition
DDA3937
_RS08185
DDA3937
_RS08190
DDA3937
_RS08195
DDA3937
_RS08200
DDA3937
_RS08205
control
PDB
-0.3
-0.6
+0.1
+0.0
-0.2
control
PDB
-0.1
-0.8
+0.0
-0.2
+0.2
plant
Stem-Norland
-0.4
-0.2
-0.3
+0.0
-0.0
carbon source
M9+glycerol
+0.1
-0.5
+0.3
-0.4
-0.3
plant
Stem-Atlantic
+0.0
-0.2
-0.2
-0.3
-0.1
carbon source
M9+sucrose
-0.2
-0.5
+0.1
-0.2
-0.1
carbon source
M9+glucose+arginine
+0.0
-0.7
-0.1
+0.0
+0.0
control
PDB
+0.2
-0.1
-0.2
-0.7
+0.1
plant
Stem-Atlantic
-0.0
+0.1
+0.0
-0.5
-0.2
carbon source
M9+starch
-0.1
+0.1
-0.2
-0.2
-0.2
plant
Upstate
+0.0
+0.1
+0.2
-0.7
-0.0
plant
Stem-Atlantic
+0.2
-0.1
-0.0
-0.3
-0.1
plant
Stem-Norland
+0.2
-0.2
-0.2
-0.2
-0.0
plant
Stem-Norland
-0.1
+0.7
-0.4
-0.3
-0.3
carbon source
M9+glycerol
+0.0
+0.2
-0.3
+0.2
-0.3
plant
Stem-Norland
+0.2
+0.1
-0.1
-0.2
-0.1
carbon source
M9+glycerol
-0.1
-0.3
-0.1
-0.0
+0.3
plant
Upstate
-0.2
+0.1
-0.2
+0.1
+0.2
plant
Atlantic
-0.0
+0.3
-0.1
-0.2
+0.2
plant
Norland
+0.3
-0.5
-0.1
+0.3
+0.2
plant
Upstate
+0.1
-0.2
-0.1
+0.3
+0.2
control
LB
-0.0
-0.0
+0.0
+0.6
-0.2
plant
Norland
+0.1
+0.4
-0.1
+0.3
-0.2
plant
Norland
+0.2
+0.3
+0.2
-0.0
-0.1
control
PDB
-0.2
+0.2
-0.1
+0.6
+0.1
plant
Atlantic
+0.2
+0.3
+0.1
-0.2
+0.2
control
PDB
-0.4
+0.2
+0.5
+0.3
+0.0
plant
Norland
+0.3
+0.0
-0.0
+0.2
+0.3
plant
Norland
+0.1
+0.7
+0.0
-0.1
+0.1
plant
Stem-Atlantic
+0.2
+0.5
+0.3
+0.0
+0.0
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