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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS08145 and DDA3937_RS08150 overlap by 8 nucleotides
DDA3937_RS08150 and DDA3937_RS08155 overlap by 4 nucleotides
DDA3937_RS08155 and DDA3937_RS08160 are separated by 278 nucleotides
DDA3937_RS08160 and DDA3937_RS08165 are separated by 305 nucleotides
DDA3937_RS08145: DDA3937_RS08145 - metal ABC transporter permease, at 1,844,957 to 1,845,811
_RS08145
DDA3937_RS08150: DDA3937_RS08150 - manganese/iron ABC transporter ATP-binding protein, at 1,845,804 to 1,846,700
_RS08150
DDA3937_RS08155: DDA3937_RS08155 - metal ABC transporter substrate-binding protein, at 1,846,697 to 1,847,605
_RS08155
DDA3937_RS08160: DDA3937_RS08160 - LysR family transcriptional regulator, at 1,847,884 to 1,848,804
_RS08160
DDA3937_RS08165: DDA3937_RS08165 - MFS transporter, at 1,849,110 to 1,850,441
_RS08165
Group
Condition
DDA3937
_RS08145
DDA3937
_RS08150
DDA3937
_RS08155
DDA3937
_RS08160
DDA3937
_RS08165
carbon source
M9+glucose+arginine
-1.6
-2.6
-3.4
+0.8
-0.3
carbon source
M9+glucose
-2.3
-2.2
-2.8
+0.3
-0.1
carbon source
M9+glucose+arginine
-1.9
-2.0
-3.2
+0.6
-0.1
carbon source
M9+glucose
-1.7
-2.6
-2.7
+0.5
-0.2
carbon source
M9+glucose+arginine
-1.6
-2.4
-2.9
+0.5
-0.0
carbon source
M9+glucose
-1.5
-2.4
-2.9
+0.7
-0.1
control
PDB
-2.1
-0.0
-0.3
-1.2
-0.6
control
PDB
-0.9
-0.1
-0.6
-0.8
-0.7
control
PDB
-1.1
-0.5
-0.3
-0.7
-0.3
control
PDB
-0.8
-0.6
+0.1
-0.5
-0.7
carbon source
M9+glycerol
-0.9
-0.7
-0.7
-0.2
+0.2
control
PDB
-0.0
-0.2
-1.5
-0.4
+0.0
carbon source
M9+starch
-1.1
-0.2
-0.7
+0.0
+0.0
control
PDB
-0.5
+0.1
-1.1
+0.0
-0.4
plant
Atlantic
-0.5
-0.3
-0.6
-0.2
-0.2
carbon source
M9+polygalacturonate
-0.7
-0.6
-0.4
-0.0
-0.1
carbon source
M9+sucrose
-0.7
-0.3
-1.0
+0.1
-0.0
carbon source
M9+sucrose
-0.6
-0.5
-0.6
-0.1
-0.0
plant
Atlantic
-0.7
-0.5
-0.1
-0.5
+0.0
control
LB
-0.6
-0.3
-0.5
-0.2
-0.2
carbon source
M9+glycerol
-1.0
-0.5
+0.0
-0.2
-0.1
plant
Stem-Atlantic
-0.9
-0.2
-0.3
-0.0
-0.2
carbon source
M9+sucrose
-0.6
-0.5
-0.7
+0.1
+0.1
plant
Stem-Norland
-0.9
-0.8
+0.0
+0.4
-0.3
plant
Stem-Atlantic
-0.8
-0.8
+0.5
-0.2
+0.1
plant
Norland
-1.1
+0.3
-0.1
-0.0
-0.2
plant
Stem-Atlantic
-0.9
-0.1
+0.3
-0.2
-0.2
plant
Stem-Norland
-0.8
-0.1
+0.4
-0.1
-0.2
plant
Stem-Atlantic
-0.4
+0.6
-0.5
+0.0
+0.0
plant
Norland
+1.4
-0.6
-0.5
+0.1
+0.3
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