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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS08080 and DDA3937_RS08085 are separated by 98 nucleotides
DDA3937_RS08085 and DDA3937_RS08090 are separated by 708 nucleotides
DDA3937_RS08090 and DDA3937_RS08095 are separated by 419 nucleotides
DDA3937_RS08095 and DDA3937_RS08100 are separated by 0 nucleotides
DDA3937_RS08080: DDA3937_RS08080 - PAS domain-containing protein, at 1,831,775 to 1,832,395
_RS08080
DDA3937_RS08085: DDA3937_RS08085 - MFS transporter, at 1,832,494 to 1,833,705
_RS08085
DDA3937_RS08090: DDA3937_RS08090 - chemotaxis protein CheV, at 1,834,414 to 1,835,391
_RS08090
DDA3937_RS08095: DDA3937_RS08095 - malonate decarboxylase subunit alpha, at 1,835,811 to 1,837,466
_RS08095
DDA3937_RS08100: DDA3937_RS08100 - triphosphoribosyl-dephospho-CoA synthase, at 1,837,467 to 1,838,324
_RS08100
Group
Condition
DDA3937
_RS08080
DDA3937
_RS08085
DDA3937
_RS08090
DDA3937
_RS08095
DDA3937
_RS08100
plant
Stem-Atlantic
-0.3
-0.4
-0.0
-0.1
-1.4
plant
Stem-Norland
-0.6
-0.2
-0.2
+0.0
-0.8
carbon source
M9+starch
+0.1
-0.2
-0.1
-0.0
-1.4
plant
Atlantic
-0.2
-0.2
+0.1
+0.2
-1.4
carbon source
M9+glucose+arginine
-0.4
-0.0
+0.1
+0.1
-1.2
plant
Stem-Norland
-0.2
+0.0
-0.2
-0.1
-0.8
carbon source
M9+glucose+arginine
-0.3
-0.3
+0.1
-0.1
-0.7
carbon source
M9+polygalacturonate
-0.0
+0.0
+0.0
+0.0
-1.2
control
PDB
-0.3
-0.5
-0.2
+0.0
-0.2
stress
3.75mM_PTB
+0.1
-0.1
-0.1
+0.0
-1.0
plant
Upstate
+0.3
-0.1
-0.3
-0.2
-0.7
stress
1.88mM_PTB
+0.0
-0.1
-0.1
-0.0
-0.9
plant
Stem-Atlantic
+0.0
+0.1
-0.3
-0.2
-0.7
plant
Stem-Norland
+0.0
-0.0
-0.1
+0.0
-0.9
plant
Upstate
-0.5
+0.1
-0.2
+0.0
-0.2
plant
Upstate
+0.5
-0.2
+0.0
+0.0
-1.0
plant
Norland
-0.2
+0.3
-0.3
-0.0
-0.2
plant
Upstate
-0.4
+0.4
-0.1
+0.2
-0.3
carbon source
M9+starch
-0.4
-0.3
+0.2
-0.1
+0.4
control
LB
-0.3
-0.2
-0.1
+0.0
+0.5
control
PDB
+0.0
+0.1
-0.2
-0.3
+0.5
plant
Stem-Atlantic
-0.3
-0.3
-0.1
-0.0
+0.8
control
PDB
-0.8
-0.2
-0.3
+0.0
+1.6
control
PDB
-0.2
+0.2
-0.3
-0.2
+1.0
plant
Atlantic
+0.1
-0.1
-0.0
-0.0
+0.9
control
PDB
+0.1
-0.3
-0.4
-0.2
+1.8
carbon source
M9+glycerol
-0.1
+0.3
-0.1
+0.1
+1.1
plant
Atlantic
-0.1
+0.0
-0.0
+0.0
+1.4
carbon source
M9+glycerol
-0.1
+0.6
-0.0
+0.1
+0.9
plant
Atlantic
+0.3
+0.3
+0.0
-0.0
+0.9
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