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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS08070 and DDA3937_RS08075 are separated by 33 nucleotides
DDA3937_RS08075 and DDA3937_RS08080 are separated by 197 nucleotides
DDA3937_RS08080 and DDA3937_RS08085 are separated by 98 nucleotides
DDA3937_RS08085 and DDA3937_RS08090 are separated by 708 nucleotides
DDA3937_RS08070: DDA3937_RS08070 - alginate lyase family protein, at 1,829,529 to 1,830,575
_RS08070
DDA3937_RS08075: DDA3937_RS08075 - threo-3-hydroxy-L-aspartate ammonia-lyase, at 1,830,609 to 1,831,577
_RS08075
DDA3937_RS08080: DDA3937_RS08080 - PAS domain-containing protein, at 1,831,775 to 1,832,395
_RS08080
DDA3937_RS08085: DDA3937_RS08085 - MFS transporter, at 1,832,494 to 1,833,705
_RS08085
DDA3937_RS08090: DDA3937_RS08090 - chemotaxis protein CheV, at 1,834,414 to 1,835,391
_RS08090
Group
Condition
DDA3937
_RS08070
DDA3937
_RS08075
DDA3937
_RS08080
DDA3937
_RS08085
DDA3937
_RS08090
control
PDB
-0.2
+0.6
-0.8
-0.2
-0.3
plant
Stem-Norland
-0.3
+0.1
-0.2
+0.0
-0.2
control
PDB
-0.4
+1.0
-0.3
-0.5
-0.2
plant
Upstate
+0.0
+0.2
-0.5
+0.1
-0.2
plant
Atlantic
+0.3
-0.4
-0.1
-0.1
-0.2
carbon source
M9+starch
+0.2
-0.0
-0.4
-0.3
+0.2
carbon source
M9+glycerol
+0.3
-0.4
+0.2
-0.3
-0.1
plant
Stem-Atlantic
+0.2
-0.1
+0.2
-0.5
-0.1
plant
Upstate
-0.0
-0.0
-0.4
+0.4
-0.1
plant
Stem-Norland
+0.4
+0.4
-0.6
-0.2
-0.2
plant
Stem-Atlantic
+0.2
+0.4
-0.3
-0.4
-0.0
carbon source
M9+glucose+arginine
-0.1
+0.5
-0.3
-0.3
+0.1
plant
Norland
-0.0
+0.2
-0.2
+0.3
-0.3
control
PDB
-0.0
+0.9
-0.4
-0.1
-0.3
control
PDB
+0.5
+0.2
+0.1
-0.3
-0.4
carbon source
M9+glucose
+0.2
+0.4
-0.2
-0.3
-0.0
carbon source
M9+glucose+arginine
-0.2
+0.5
-0.4
-0.0
+0.2
plant
Upstate
-0.1
+0.5
+0.3
-0.1
-0.3
carbon source
M9+glycerol
-0.1
+0.3
-0.1
+0.3
-0.1
plant
Atlantic
-0.2
-0.1
+0.3
+0.3
+0.0
plant
Norland
+0.3
+0.1
+0.0
+0.4
-0.4
plant
Norland
+0.2
+0.1
+0.2
+0.2
-0.3
carbon source
M9+glucose
+0.1
+0.5
-0.3
-0.1
+0.1
carbon source
M9+glucose+arginine
+0.2
+0.6
-0.4
-0.0
+0.1
plant
Stem-Atlantic
+0.5
+0.7
-0.3
-0.3
-0.1
control
PDB
-0.3
+1.0
+0.0
+0.1
-0.2
control
PDB
+0.4
+0.4
-0.2
+0.2
-0.3
carbon source
M9+glycerol
+0.1
+0.8
+0.1
-0.1
+0.1
plant
Stem-Norland
+0.3
+0.9
-0.2
+0.0
+0.1
carbon source
M9+glycerol
+0.2
+0.5
+0.3
+0.4
+0.0
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