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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS07955 and DDA3937_RS07960 are separated by 172 nucleotides
DDA3937_RS07960 and DDA3937_RS07965 are separated by 485 nucleotides
DDA3937_RS07965 and DDA3937_RS07970 are separated by 43 nucleotides
DDA3937_RS07970 and DDA3937_RS07975 are separated by 3 nucleotides
DDA3937_RS07955: DDA3937_RS07955 - LysR family transcriptional regulator, at 1,804,447 to 1,805,388
_RS07955
DDA3937_RS07960: DDA3937_RS07960 - DUF2076 domain-containing protein, at 1,805,561 to 1,806,328
_RS07960
DDA3937_RS07965: DDA3937_RS07965 - isopenicillin N synthase family oxygenase, at 1,806,814 to 1,807,848
_RS07965
DDA3937_RS07970: DDA3937_RS07970 - ABC transporter substrate-binding protein, at 1,807,892 to 1,808,698
_RS07970
DDA3937_RS07975: DDA3937_RS07975 - ATP-binding cassette domain-containing protein, at 1,808,702 to 1,809,493
_RS07975
Group
Condition
DDA3937
_RS07955
DDA3937
_RS07960
DDA3937
_RS07965
DDA3937
_RS07970
DDA3937
_RS07975
control
PDB
-1.0
-1.3
-0.1
+0.3
-0.1
control
PDB
-0.4
-1.7
+0.1
-0.0
+0.1
plant
Stem-Norland
-0.4
+0.1
-0.3
-0.3
-0.6
control
PDB
-0.2
-0.8
-0.3
-0.1
-0.2
plant
Stem-Atlantic
+0.3
+0.0
-1.2
+0.3
-0.8
carbon source
M9+glucose+arginine
-0.9
-0.1
-0.1
+0.2
-0.1
control
PDB
-0.0
-0.9
-0.3
+0.3
-0.0
plant
Upstate
-0.5
-0.2
+0.1
-0.4
+0.2
plant
Upstate
+0.2
-0.4
-0.7
-0.2
+0.3
plant
Upstate
-0.3
-0.5
-0.2
+0.6
-0.4
plant
Atlantic
-0.4
+0.0
-0.3
-0.5
+0.5
plant
Upstate
-0.0
-0.1
-0.3
+0.4
-0.6
plant
Stem-Atlantic
-0.0
+0.1
-0.7
+0.6
-0.6
plant
Atlantic
-0.6
-0.3
+0.1
-0.1
+0.3
control
PDB
-0.1
-1.0
-0.1
+0.1
+0.6
carbon source
M9+glycerol
-0.7
-0.1
+0.3
+0.3
-0.1
plant
Stem-Atlantic
+0.1
+0.1
-0.4
+0.6
-0.6
control
PDB
-0.2
-0.9
+0.5
+0.0
+0.4
plant
Norland
+0.3
-0.2
-0.3
+0.5
+0.1
plant
Stem-Norland
+1.0
-0.4
-0.2
+0.4
-0.3
plant
Norland
+0.2
-0.1
+0.4
+0.4
-0.4
carbon source
M9+starch
-0.2
+0.3
+0.3
-0.3
+0.4
plant
Stem-Norland
+0.6
+0.1
-0.3
+0.6
-0.2
plant
Stem-Atlantic
-0.2
-0.1
+0.7
+0.5
-0.1
plant
Stem-Atlantic
-0.8
+0.0
+0.7
+0.6
+0.3
plant
Stem-Norland
+0.5
+0.4
+0.2
+0.1
-0.2
plant
Norland
+0.2
-0.3
+0.3
+0.0
+1.3
plant
Stem-Norland
-0.3
+0.1
+0.6
+1.1
+0.1
plant
Atlantic
-0.3
-0.4
+0.1
-0.1
+2.3
plant
Upstate
+0.9
-0.3
+0.7
+0.2
+0.1
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