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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS07775 and DDA3937_RS07780 are separated by 69 nucleotides
DDA3937_RS07780 and DDA3937_RS07785 are separated by 152 nucleotides
DDA3937_RS07785 and DDA3937_RS07790 are separated by 185 nucleotides
DDA3937_RS07790 and DDA3937_RS07795 are separated by 13 nucleotides
DDA3937_RS07775: DDA3937_RS07775 - helix-turn-helix transcriptional regulator, at 1,757,216 to 1,757,782
_RS07775
DDA3937_RS07780: DDA3937_RS07780 - N-acetyltransferase, at 1,757,852 to 1,758,364
_RS07780
DDA3937_RS07785: DDA3937_RS07785 - OsmC family protein, at 1,758,517 to 1,758,897
_RS07785
DDA3937_RS07790: DDA3937_RS07790 - aminopeptidase P family protein, at 1,759,083 to 1,760,165
_RS07790
DDA3937_RS07795: DDA3937_RS07795 - GNAT family N-acetyltransferase, at 1,760,179 to 1,760,685
_RS07795
Group
Condition
DDA3937
_RS07775
DDA3937
_RS07780
DDA3937
_RS07785
DDA3937
_RS07790
DDA3937
_RS07795
plant
Norland
+0.1
-0.1
-0.8
-0.4
-1.2
plant
Stem-Atlantic
-0.4
+0.2
-1.9
+0.1
-0.5
stress
7.5mM_PTB
-0.1
+0.1
-1.3
-0.4
-0.8
control
PDB
-0.4
-0.5
-1.3
-0.2
-0.0
control
PDB
-0.4
+0.5
-0.7
+0.1
-1.8
carbon source
M9+glycerol
-0.5
-0.3
-1.4
-0.1
+0.0
plant
Stem-Norland
-0.3
-0.2
+0.2
-0.3
-1.5
control
PDB
-0.4
+0.3
-0.3
-0.7
-0.8
control
LB
-0.3
+0.1
+0.1
-0.1
-1.4
carbon source
M9+glucose+arginine
-0.5
-0.3
+1.0
+0.1
-1.9
plant
Atlantic
-0.1
+0.2
+0.1
+0.0
-1.6
carbon source
M9+glucose+arginine
-0.8
+0.2
+0.7
-0.0
-1.4
control
PDB
-0.1
-0.1
+0.9
-0.1
-1.7
control
PDB
+0.0
-0.0
+1.1
-0.5
-1.2
plant
Stem-Atlantic
+0.0
-0.1
+1.0
-0.3
-1.2
plant
Atlantic
+0.0
-0.0
-1.6
+0.3
+0.8
carbon source
M9+starch
-0.4
+0.1
+0.6
+0.1
-0.9
plant
Upstate
-0.3
-0.2
+1.0
-0.3
-0.7
plant
Upstate
-0.3
+0.1
-1.1
-0.3
+1.2
plant
Stem-Atlantic
-0.4
-0.3
+1.5
-0.3
-0.8
carbon source
M9+glucose
-0.8
+0.3
+1.0
+0.0
-0.5
carbon source
M9+polygalacturonate
-0.2
-0.0
+1.1
-0.1
-0.9
plant
Stem-Norland
-0.3
-0.4
+1.3
-0.0
-0.2
carbon source
M9+polygalacturonate
-0.2
-0.2
+1.4
-0.0
-0.6
plant
Norland
-0.2
+0.3
-0.8
+0.7
+0.5
carbon source
M9+glucose
-0.7
-0.2
+1.0
-0.2
+0.7
plant
Atlantic
-0.3
+0.4
+1.5
-0.2
-0.6
carbon source
M9+glucose+arginine
-0.5
+0.0
+1.1
-0.2
+0.5
plant
Stem-Atlantic
-0.6
+0.9
+0.2
+0.4
+0.3
carbon source
M9+glycerol
-0.3
+0.2
+1.9
-0.1
-0.1
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