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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS07760 and DDA3937_RS07765 are separated by 11 nucleotides
DDA3937_RS07765 and DDA3937_RS07770 are separated by 95 nucleotides
DDA3937_RS07770 and DDA3937_RS22055 overlap by 8 nucleotides
DDA3937_RS22055 and DDA3937_RS07775 are separated by 115 nucleotides
DDA3937_RS07760: DDA3937_RS07760 - iron ABC transporter permease, at 1,753,887 to 1,754,936
_RS07760
DDA3937_RS07765: DDA3937_RS07765 - ABC transporter ATP-binding protein, at 1,754,948 to 1,755,757
_RS07765
DDA3937_RS07770: DDA3937_RS07770 - RraA family protein, at 1,755,853 to 1,756,488
_RS07770
DDA3937_RS22055: DDA3937_RS22055 - IS630 family transposase, at 1,756,481 to 1,757,100
_RS22055
DDA3937_RS07775: DDA3937_RS07775 - helix-turn-helix transcriptional regulator, at 1,757,216 to 1,757,782
_RS07775
Group
Condition
DDA3937
_RS07760
DDA3937
_RS07765
DDA3937
_RS07770
DDA3937
_RS22055
DDA3937
_RS07775
plant
Stem-Atlantic
-1.9
-2.8
-0.3
-0.3
-0.6
plant
Stem-Atlantic
-2.7
-2.4
+0.2
-0.2
-0.4
plant
Stem-Norland
-3.5
-2.0
+0.2
+0.4
-0.3
plant
Stem-Norland
-3.5
-1.6
+0.5
+0.1
-0.4
plant
Stem-Atlantic
-2.4
-2.0
+0.2
+0.4
-0.4
plant
Stem-Atlantic
-2.7
-1.2
+0.4
-0.1
-0.4
plant
Stem-Norland
-2.6
-2.5
+1.0
+0.5
-0.3
plant
Stem-Norland
-1.6
-1.1
+0.1
-0.3
-0.3
plant
Norland
-1.3
-1.2
+0.0
-0.2
-0.0
plant
Upstate
-1.2
-0.9
-0.1
-0.2
-0.3
plant
Stem-Atlantic
-1.4
-1.4
+0.4
-0.1
+0.0
plant
Stem-Norland
-2.4
-0.2
+0.2
+0.2
-0.1
carbon source
M9+polygalacturonate
-1.4
-0.7
-0.2
+0.1
-0.1
plant
Atlantic
-1.1
-1.2
+0.1
-0.0
-0.2
plant
Norland
-1.6
-0.8
+0.4
-0.0
-0.2
carbon source
M9+glycerol
-1.3
-0.7
+0.3
-0.1
-0.1
carbon source
M9+glycerol
-1.0
-0.9
+0.6
-0.2
-0.3
carbon source
M9+glucose
-1.4
-0.5
+1.0
+0.0
-0.8
carbon source
M9+glucose+arginine
-0.7
-0.9
+1.1
-0.1
-0.5
carbon source
M9+glucose
-0.8
-0.0
+0.7
-0.2
-0.7
carbon source
M9+glycerol
-0.8
-0.6
+0.6
+0.4
-0.4
carbon source
M9+glucose+arginine
-0.7
-0.1
+1.1
-0.3
-0.8
carbon source
M9+glucose+arginine
-0.4
-0.9
+1.0
+0.1
-0.5
carbon source
M9+glucose
-1.0
-0.1
+1.0
-0.2
-0.4
control
PDB
+1.0
+1.2
+0.2
-0.8
+0.0
control
PDB
+1.4
+1.6
+0.5
-0.5
-0.4
control
PDB
+2.3
+1.7
-0.8
-0.2
-0.4
control
PDB
+1.6
+1.7
+0.4
+0.3
-0.1
control
PDB
+2.4
+2.2
+1.0
+0.3
-0.4
control
PDB
+2.6
+2.5
+0.3
+0.0
+0.0
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DDA3937_RS07770
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