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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS07700 and DDA3937_RS07705 are separated by 11 nucleotides
DDA3937_RS07705 and DDA3937_RS07710 are separated by 495 nucleotides
DDA3937_RS07710 and DDA3937_RS07715 are separated by 171 nucleotides
DDA3937_RS07715 and DDA3937_RS07720 are separated by 106 nucleotides
DDA3937_RS07700: DDA3937_RS07700 - type I-C CRISPR-associated protein Cas5, at 1,735,212 to 1,735,874
_RS07700
DDA3937_RS07705: DDA3937_RS07705 - CRISPR-associated endonuclease Cas3'', at 1,735,886 to 1,738,147
_RS07705
DDA3937_RS07710: DDA3937_RS07710 - diaminobutyrate--2-oxoglutarate transaminase, at 1,738,643 to 1,740,022
_RS07710
DDA3937_RS07715: DDA3937_RS07715 - TonB-dependent receptor, at 1,740,194 to 1,742,308
_RS07715
DDA3937_RS07720: DDA3937_RS07720 - IucA/IucC family siderophore biosynthesis protein, at 1,742,415 to 1,744,277
_RS07720
Group
Condition
DDA3937
_RS07700
DDA3937
_RS07705
DDA3937
_RS07710
DDA3937
_RS07715
DDA3937
_RS07720
plant
Stem-Norland
-0.1
-0.1
-0.1
-1.5
-0.2
plant
Stem-Norland
-0.2
+0.2
-0.9
-1.0
-0.0
plant
Stem-Norland
+0.0
+0.1
-0.9
-0.7
-0.0
plant
Stem-Atlantic
-0.3
+0.1
-0.5
-0.5
+0.1
plant
Stem-Atlantic
+0.4
-0.1
-0.3
-1.1
+0.2
plant
Norland
-0.4
+0.0
+0.8
+0.3
+0.3
plant
Upstate
+0.0
+0.2
+0.4
+0.2
+0.6
plant
Atlantic
+0.1
+0.2
+0.6
+0.3
+0.2
stress
7.5mM_PTB
+0.1
+0.0
+0.4
+0.8
+0.1
stress
7.5mM_PTB
+0.0
+0.0
+0.3
+0.9
+0.2
plant
Atlantic
-0.2
+0.2
+0.9
-0.0
+0.7
carbon source
M9+glycerol
-0.1
+0.1
+0.4
+1.3
-0.3
plant
Atlantic
-0.2
+0.3
+0.8
+0.4
+0.3
carbon source
M9+glucose
+0.3
+0.0
+0.5
+0.8
+0.5
carbon source
M9+glucose
+0.2
-0.0
+0.5
+1.1
+0.5
carbon source
M9+glycerol
-0.1
+0.1
+1.0
+1.2
+0.1
carbon source
M9+glucose
+0.1
+0.1
+0.4
+0.9
+0.8
carbon source
M9+glycerol
+0.5
+0.2
+0.8
+1.4
-0.0
carbon source
M9+glycerol
+0.1
+0.1
+1.7
+0.9
+0.0
carbon source
M9+glucose+arginine
+0.5
+0.1
+0.2
+1.3
+0.8
carbon source
M9+glycerol
+0.2
+0.2
+1.3
+1.4
+0.1
carbon source
M9+glucose+arginine
+0.3
-0.1
+0.9
+1.4
+0.7
control
PDB
+0.3
-0.1
+0.6
+2.3
+0.2
carbon source
M9+glycerol
+0.2
+0.1
+1.8
+1.3
-0.0
carbon source
M9+glucose+arginine
+0.6
+0.0
+0.9
+1.4
+1.0
control
PDB
+0.3
-0.1
+0.8
+2.4
+0.5
control
PDB
-0.1
+0.2
+0.8
+2.7
+0.6
control
PDB
+0.6
-0.0
+0.7
+2.5
+0.4
control
PDB
+0.4
+0.4
+1.0
+2.5
+0.2
control
PDB
+0.5
+0.2
+1.2
+2.5
+0.5
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