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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS07155 and DDA3937_RS07160 are separated by 20 nucleotides
DDA3937_RS07160 and DDA3937_RS07165 are separated by 133 nucleotides
DDA3937_RS07165 and DDA3937_RS07170 overlap by 4 nucleotides
DDA3937_RS07170 and DDA3937_RS07175 are separated by 159 nucleotides
DDA3937_RS07155: DDA3937_RS07155 - multidrug efflux RND transporter permease subunit, at 1,610,865 to 1,613,999
_RS07155
DDA3937_RS07160: DDA3937_RS07160 - efflux RND transporter periplasmic adaptor subunit, at 1,614,020 to 1,615,282
_RS07160
DDA3937_RS07165: DDA3937_RS07165 - response regulator transcription factor, at 1,615,416 to 1,616,153
_RS07165
DDA3937_RS07170: DDA3937_RS07170 - HAMP domain-containing protein, at 1,616,150 to 1,617,277
_RS07170
DDA3937_RS07175: DDA3937_RS07175 - LysR family transcriptional regulator, at 1,617,437 to 1,618,336
_RS07175
Group
Condition
DDA3937
_RS07155
DDA3937
_RS07160
DDA3937
_RS07165
DDA3937
_RS07170
DDA3937
_RS07175
plant
Atlantic
-0.2
-0.8
-0.2
-0.7
-0.6
plant
Atlantic
-0.0
-0.5
-0.2
+0.4
-2.1
plant
Stem-Atlantic
-0.1
-1.0
-0.3
-0.4
-0.4
plant
Stem-Norland
+0.1
-0.5
+0.1
+0.4
-2.0
plant
Atlantic
+0.3
+0.0
-0.1
-0.1
-2.0
plant
Upstate
-0.2
-0.1
-0.1
+0.1
-1.6
plant
Norland
-0.0
-0.3
+0.2
-0.1
-1.5
control
PDB
+0.1
-0.3
-0.2
+0.5
-2.0
carbon source
M9+glucose+arginine
-0.2
+0.3
-0.2
-0.4
-1.1
plant
Stem-Atlantic
-0.0
-0.2
-0.1
-0.4
-0.6
carbon source
M9+starch
+0.0
-0.3
-0.3
+0.1
-0.8
plant
Atlantic
-0.2
-0.1
+0.5
-0.0
-1.4
carbon source
M9+sucrose
-0.0
+0.2
-0.2
+0.1
-1.2
carbon source
M9+glucose+arginine
+0.1
+0.7
-0.4
-0.2
-1.4
plant
Stem-Norland
-0.1
-0.2
+0.1
-0.4
-0.5
control
PDB
+0.1
-0.4
-0.1
+0.1
-0.7
carbon source
M9+glycerol
+0.1
+0.2
+0.1
+0.1
-0.9
plant
Norland
+0.4
-0.2
-0.3
+0.4
-0.6
carbon source
M9+glucose
+0.0
+0.6
-0.2
-0.1
-0.6
plant
Atlantic
-0.1
-0.2
+0.4
+0.3
-0.7
carbon source
M9+glucose+arginine
-0.1
+0.3
-0.3
+0.4
-0.5
carbon source
M9+polygalacturonate
+0.2
+0.4
-0.1
+0.1
-0.5
control
PDB
+0.2
+0.7
-0.1
+0.7
-0.9
plant
Stem-Atlantic
+0.3
+0.4
-0.2
-0.5
+0.9
plant
Stem-Atlantic
-0.2
+0.8
-0.5
-0.4
+1.3
plant
Upstate
-0.1
+0.2
-0.0
-0.2
+1.1
plant
Stem-Atlantic
-0.1
+1.1
+0.5
+0.0
-0.4
control
PDB
-0.2
+0.1
-0.0
+0.9
+0.5
plant
Stem-Norland
-0.2
+0.5
+0.4
-0.2
+0.9
control
PDB
+0.2
-0.1
-0.3
+0.6
+1.3
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