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Gene
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Cofit
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS22035 and DDA3937_RS06985 are separated by 57 nucleotides
DDA3937_RS06985 and DDA3937_RS06990 are separated by 25 nucleotides
DDA3937_RS06990 and DDA3937_RS22040 are separated by 10 nucleotides
DDA3937_RS22040 and DDA3937_RS06995 are separated by 94 nucleotides
DDA3937_RS22035: DDA3937_RS22035 - immunity protein RhsIC, at 1,567,475 to 1,567,897
_RS22035
DDA3937_RS06985: DDA3937_RS06985 - type I addiction module toxin, SymE family, at 1,567,955 to 1,568,146
_RS06985
DDA3937_RS06990: DDA3937_RS06990 - RHS domain-containing protein, at 1,568,172 to 1,569,566
_RS06990
DDA3937_RS22040: DDA3937_RS22040 - hypothetical protein, at 1,569,577 to 1,569,957
_RS22040
DDA3937_RS06995: DDA3937_RS06995 - RHS domain-containing protein, at 1,570,052 to 1,571,092
_RS06995
Group
Condition
DDA3937
_RS22035
DDA3937
_RS06985
DDA3937
_RS06990
DDA3937
_RS22040
DDA3937
_RS06995
plant
Stem-Atlantic
-3.2
+0.1
-1.2
-1.0
-0.1
carbon source
M9+starch
-4.0
-0.1
-0.8
-0.0
-0.3
plant
Stem-Atlantic
-3.7
-0.5
-0.0
+0.5
+0.0
carbon source
M9+glucose
-2.8
-0.5
-0.5
+0.3
-0.1
plant
Stem-Atlantic
-3.2
+0.7
-1.7
+0.8
-0.0
plant
Stem-Norland
-2.4
-0.6
-0.3
-0.1
+0.0
carbon source
M9+glucose+arginine
-1.7
-0.7
+0.1
-0.8
-0.3
plant
Stem-Norland
-2.3
-0.5
-0.0
-0.2
-0.1
plant
Stem-Norland
-0.8
-0.5
-1.4
-0.5
-0.1
carbon source
M9+glucose+arginine
-1.9
+0.4
-0.7
-0.4
-0.2
plant
Stem-Atlantic
-2.5
-0.7
+0.6
+0.0
+0.1
control
LB
-1.8
-0.2
+0.1
-0.8
+0.1
plant
Upstate
-2.6
-0.2
+0.7
-0.4
-0.0
plant
Upstate
-2.2
+0.3
-0.2
-0.0
-0.2
carbon source
M9+sucrose
-2.4
+0.5
-0.1
+0.0
-0.1
carbon source
M9+sucrose
-2.2
+0.6
-0.1
-0.2
-0.1
plant
Stem-Norland
-2.1
-0.4
-0.1
+0.5
+0.1
plant
Stem-Atlantic
-3.2
-0.3
+1.0
+0.2
+0.4
carbon source
M9+glycerol
+0.8
-0.5
-0.7
-0.7
-0.3
carbon source
M9+starch
-1.2
+0.5
-0.5
+0.5
-0.1
plant
Stem-Norland
-2.0
+0.1
-0.1
+1.1
+0.2
carbon source
M9+starch
-1.5
+0.6
+0.2
+0.2
-0.2
carbon source
M9+sucrose
-2.0
+0.6
+0.4
+0.4
-0.0
plant
Upstate
-1.2
-0.6
+1.0
+0.4
-0.1
control
PDB
+1.6
-0.3
-0.6
-0.7
-0.2
carbon source
M9+glycerol
+1.1
+0.4
-0.4
-0.8
-0.3
plant
Atlantic
-1.8
+0.9
+0.1
+1.1
+0.3
control
PDB
+1.3
+0.0
-0.2
+0.8
-0.4
control
PDB
+1.4
+0.7
-0.4
+0.2
-0.2
control
PDB
+1.9
+0.0
+0.0
+0.7
-0.5
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DDA3937_RS06990
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