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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS06965 and DDA3937_RS06970 are separated by 158 nucleotides
DDA3937_RS06970 and DDA3937_RS06975 overlap by 4 nucleotides
DDA3937_RS06975 and DDA3937_RS06980 are separated by 19 nucleotides
DDA3937_RS06980 and DDA3937_RS22035 are separated by 343 nucleotides
DDA3937_RS06965: DDA3937_RS06965 - ankyrin repeat domain-containing protein, at 1,559,696 to 1,560,463
_RS06965
DDA3937_RS06970: DDA3937_RS06970 - DUF4123 domain-containing protein, at 1,560,622 to 1,561,590
_RS06970
DDA3937_RS06975: DDA3937_RS06975 - DUF4123 domain-containing protein, at 1,561,587 to 1,562,504
_RS06975
DDA3937_RS06980: DDA3937_RS06980 - RHS repeat protein, at 1,562,524 to 1,567,131
_RS06980
DDA3937_RS22035: DDA3937_RS22035 - immunity protein RhsIC, at 1,567,475 to 1,567,897
_RS22035
Group
Condition
DDA3937
_RS06965
DDA3937
_RS06970
DDA3937
_RS06975
DDA3937
_RS06980
DDA3937
_RS22035
plant
Stem-Atlantic
-1.0
-0.4
-0.1
+0.0
-3.2
plant
Stem-Atlantic
-1.3
-0.3
+0.1
+0.1
-3.2
carbon source
M9+starch
-0.2
-0.1
+0.0
+0.1
-4.0
plant
Stem-Atlantic
-0.2
-0.3
-0.1
+0.1
-3.2
plant
Stem-Atlantic
+0.1
-0.1
+0.1
+0.1
-3.7
carbon source
M9+glucose
-0.3
+0.0
-0.1
-0.0
-2.8
plant
Upstate
-0.3
-0.4
+0.1
-0.0
-2.6
plant
Stem-Norland
-0.4
-0.1
-0.1
-0.1
-2.3
plant
Upstate
-0.4
+0.0
-0.3
+0.1
-2.2
plant
Stem-Norland
-0.2
+0.1
-0.0
-0.1
-2.4
carbon source
M9+glucose+arginine
-0.6
-0.0
-0.1
-0.1
-1.7
carbon source
M9+sucrose
-0.5
+0.1
+0.2
+0.0
-2.2
plant
Stem-Atlantic
+0.5
-0.0
-0.2
+0.0
-2.5
carbon source
M9+sucrose
-0.3
+0.0
-0.1
+0.1
-2.0
carbon source
M9+sucrose
-0.0
-0.1
+0.3
+0.0
-2.4
plant
Stem-Norland
-0.3
+0.1
+0.3
-0.0
-2.1
plant
Upstate
-0.3
-0.1
-0.1
+0.1
-1.6
carbon source
M9+glucose
-0.2
-0.1
+0.1
-0.0
-1.6
plant
Atlantic
+0.5
-0.3
-0.3
-0.0
-1.8
stress
1.88mM_PTB
-0.4
-0.1
+0.2
+0.1
-1.6
carbon source
M9+glucose+arginine
-0.1
-0.2
+0.3
+0.1
-1.9
plant
Norland
-0.0
+0.2
+0.3
+0.3
-2.1
carbon source
M9+polygalacturonate
+0.2
+0.2
+0.1
+0.2
-1.9
plant
Norland
+0.7
-0.2
+0.1
-0.0
-1.6
plant
Stem-Norland
+0.6
+0.1
+0.2
+0.1
-2.0
carbon source
M9+glycerol
-0.7
-0.2
-0.3
-0.2
+1.1
control
PDB
-0.4
+0.3
-0.0
+0.2
+1.6
control
PDB
+0.6
-0.3
+0.3
-0.0
+1.3
control
PDB
+0.0
+0.0
-0.1
+0.1
+1.9
control
PDB
+0.6
+0.3
-0.3
+0.1
+1.4
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