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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS06590 and DDA3937_RS06595 are separated by 73 nucleotides
DDA3937_RS06595 and DDA3937_RS06600 are separated by 115 nucleotides
DDA3937_RS06600 and DDA3937_RS06605 overlap by 11 nucleotides
DDA3937_RS06605 and DDA3937_RS06610 overlap by 4 nucleotides
DDA3937_RS06590: DDA3937_RS06590 - copper-binding protein, at 1,472,839 to 1,473,249
_RS06590
DDA3937_RS06595: DDA3937_RS06595 - hypothetical protein, at 1,473,323 to 1,473,766
_RS06595
DDA3937_RS06600: DDA3937_RS06600 - galactose-1-epimerase, at 1,473,882 to 1,474,964
_RS06600
DDA3937_RS06605: DDA3937_RS06605 - galactokinase, at 1,474,954 to 1,476,105
_RS06605
DDA3937_RS06610: DDA3937_RS06610 - galactose-1-phosphate uridylyltransferase, at 1,476,102 to 1,477,154
_RS06610
Group
Condition
DDA3937
_RS06590
DDA3937
_RS06595
DDA3937
_RS06600
DDA3937
_RS06605
DDA3937
_RS06610
carbon source
M9+polygalacturonate
-0.3
+0.0
-0.3
-2.8
-2.6
carbon source
M9+polygalacturonate
-0.4
+0.0
-0.4
-2.4
-2.6
plant
Stem-Norland
-1.9
-0.1
-0.3
-1.2
-2.1
carbon source
M9+polygalacturonate
-0.1
+0.0
-0.3
-2.3
-2.0
plant
Upstate
-0.4
+0.2
-0.1
-2.1
-2.2
plant
Stem-Norland
-1.3
-0.2
-0.3
-1.2
-1.6
plant
Upstate
-0.5
+0.3
+0.5
-2.2
-2.6
plant
Stem-Norland
-1.3
+0.4
-0.4
-1.0
-1.3
plant
Upstate
-0.0
+0.1
+0.5
-1.7
-2.1
plant
Atlantic
-0.1
+0.0
-0.1
-1.2
-1.7
plant
Stem-Norland
-0.4
+0.2
-0.2
-0.8
-1.8
plant
Atlantic
-0.4
+0.3
+0.3
-1.5
-1.6
plant
Stem-Atlantic
-1.1
-0.1
-0.5
-0.2
-0.9
control
PDB
-0.9
-0.8
+0.1
-0.6
-0.4
plant
Norland
-0.6
+0.3
+0.2
-1.0
-1.5
plant
Stem-Atlantic
-1.3
-0.3
+0.3
-0.3
-0.9
plant
Upstate
-0.4
+0.1
-0.1
-1.3
-0.9
plant
Upstate
-0.1
+0.4
-0.0
-1.1
-1.5
plant
Norland
+0.3
-0.3
-0.1
-0.7
-1.3
plant
Norland
-0.4
+0.2
-0.0
-0.8
-1.1
plant
Atlantic
+0.1
-0.3
-0.0
-1.1
-0.7
plant
Upstate
-0.1
+0.4
+0.1
-0.8
-1.6
plant
Atlantic
-0.5
-0.0
+0.3
-0.4
-1.0
plant
Stem-Atlantic
+0.5
-0.3
-0.2
-0.5
-1.0
plant
Norland
+0.2
+0.1
+0.2
-1.0
-1.1
control
PDB
-1.1
+0.5
-0.1
-0.1
-0.4
plant
Stem-Norland
+0.1
+0.5
+0.0
-0.6
-1.0
plant
Norland
+0.4
+0.3
+0.0
-0.9
-0.6
plant
Atlantic
+0.5
+0.2
+0.2
-0.6
-0.9
plant
Stem-Atlantic
+0.3
+1.3
-0.0
-0.1
-0.8
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