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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS06545 and DDA3937_RS06550 are separated by 22 nucleotides
DDA3937_RS06550 and DDA3937_RS06555 are separated by 46 nucleotides
DDA3937_RS06555 and DDA3937_RS06560 are separated by 272 nucleotides
DDA3937_RS06560 and DDA3937_RS06565 are separated by 120 nucleotides
DDA3937_RS06545: DDA3937_RS06545 - quinolinate synthase NadA, at 1,460,405 to 1,461,451
_RS06545
DDA3937_RS06550: DDA3937_RS06550 - nicotinamide riboside transporter PnuC, at 1,461,474 to 1,462,199
_RS06550
DDA3937_RS06555: DDA3937_RS06555 - CDF family zinc transporter ZitB, at 1,462,246 to 1,463,181
_RS06555
DDA3937_RS06560: DDA3937_RS06560 - 3-deoxy-7-phosphoheptulonate synthase AroG, at 1,463,454 to 1,464,506
_RS06560
DDA3937_RS06565: DDA3937_RS06565 - IS4 family transposase, at 1,464,627 to 1,465,949
_RS06565
Group
Condition
DDA3937
_RS06545
DDA3937
_RS06550
DDA3937
_RS06555
DDA3937
_RS06560
DDA3937
_RS06565
carbon source
M9+sucrose
-3.9
-0.1
-0.2
-0.0
-0.0
carbon source
M9+glucose+arginine
-3.6
-0.3
+0.1
-0.3
-0.1
carbon source
M9+glucose
-3.7
-0.1
-0.0
+0.0
-0.1
carbon source
M9+glucose
-3.5
-0.2
-0.0
+0.1
-0.1
carbon source
M9+sucrose
-3.4
+0.0
+0.0
-0.1
-0.0
carbon source
M9+glucose
-3.0
-0.0
+0.1
-0.2
-0.2
carbon source
M9+sucrose
-3.3
+0.0
+0.1
-0.0
-0.0
carbon source
M9+glucose+arginine
-3.1
-0.1
-0.1
+0.0
+0.0
carbon source
M9+glucose+arginine
-3.0
+0.0
-0.2
+0.1
-0.0
carbon source
M9+polygalacturonate
-1.8
+0.0
+0.1
-0.1
-0.2
control
PDB
-0.5
-0.4
-0.7
+0.1
-0.5
carbon source
M9+polygalacturonate
-2.0
+0.1
-0.0
-0.1
+0.0
carbon source
M9+glycerol
-1.6
-0.1
-0.1
-0.0
-0.1
carbon source
M9+polygalacturonate
-2.0
+0.2
-0.0
+0.1
-0.0
plant
Stem-Norland
-1.2
+0.4
-0.5
-0.2
-0.0
control
PDB
+0.3
-0.5
-1.0
-0.0
-0.2
carbon source
M9+glycerol
-1.1
-0.0
-0.0
-0.3
+0.1
carbon source
M9+glycerol
-1.3
+0.0
+0.0
-0.2
+0.2
plant
Stem-Norland
-0.4
+0.1
-0.4
-0.2
+0.1
carbon source
M9+glycerol
-0.9
+0.1
+0.1
-0.1
+0.0
carbon source
M9+glycerol
-0.8
+0.2
+0.0
-0.0
-0.1
carbon source
M9+glycerol
-1.0
+0.1
+0.2
-0.1
+0.1
control
PDB
+0.8
-0.2
-0.5
-0.0
-0.5
plant
Stem-Norland
+0.2
+0.2
-0.7
-0.3
+0.2
control
PDB
+0.7
-0.1
-0.9
+0.1
+0.3
plant
Stem-Norland
-0.2
+0.2
+0.4
-0.2
+0.4
control
PDB
+0.8
-0.2
+0.1
-0.1
+0.0
plant
Upstate
+0.3
+0.1
+0.3
-0.2
+0.4
control
PDB
+0.7
-0.0
+0.0
+0.2
+0.0
plant
Stem-Atlantic
+0.7
+0.7
+0.4
-0.1
-0.1
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