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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS06515 and DDA3937_RS06520 are separated by 38 nucleotides
DDA3937_RS06520 and DDA3937_RS06525 are separated by 9 nucleotides
DDA3937_RS06525 and DDA3937_RS06530 are separated by 173 nucleotides
DDA3937_RS06530 and DDA3937_RS06535 are separated by 42 nucleotides
DDA3937_RS06515: DDA3937_RS06515 - Tol-Pal system protein TolB, at 1,455,330 to 1,456,616
_RS06515
DDA3937_RS06520: DDA3937_RS06520 - peptidoglycan-associated lipoprotein Pal, at 1,456,655 to 1,457,161
_RS06520
DDA3937_RS06525: DDA3937_RS06525 - cell division protein CpoB, at 1,457,171 to 1,457,995
_RS06525
DDA3937_RS06530: DDA3937_RS06530 - tRNA-Lys, at 1,458,169 to 1,458,244
_RS06530
DDA3937_RS06535: DDA3937_RS06535 - tRNA-Lys, at 1,458,287 to 1,458,362
_RS06535
Group
Condition
DDA3937
_RS06515
DDA3937
_RS06520
DDA3937
_RS06525
DDA3937
_RS06530
DDA3937
_RS06535
plant
Stem-Atlantic
N.D.
N.D.
-0.5
N.D.
-2.6
carbon source
M9+glycerol
N.D.
N.D.
-0.0
N.D.
-2.2
plant
Norland
N.D.
N.D.
-0.2
N.D.
-1.9
plant
Upstate
N.D.
N.D.
-0.2
N.D.
-1.7
plant
Stem-Norland
N.D.
N.D.
+0.2
N.D.
-2.0
carbon source
M9+glucose
N.D.
N.D.
-0.0
N.D.
-1.7
carbon source
M9+sucrose
N.D.
N.D.
-0.0
N.D.
-1.7
control
PDB
N.D.
N.D.
-0.9
N.D.
-0.8
carbon source
M9+starch
N.D.
N.D.
+0.2
N.D.
-1.9
plant
Upstate
N.D.
N.D.
-0.1
N.D.
-1.5
carbon source
M9+starch
N.D.
N.D.
-0.2
N.D.
-1.3
plant
Stem-Atlantic
N.D.
N.D.
+0.1
N.D.
-1.6
carbon source
M9+glucose+arginine
N.D.
N.D.
+0.2
N.D.
-1.6
plant
Stem-Atlantic
N.D.
N.D.
-0.1
N.D.
-1.3
plant
Norland
N.D.
N.D.
+0.0
N.D.
-1.4
carbon source
M9+polygalacturonate
N.D.
N.D.
+0.0
N.D.
-1.3
stress
1.88mM_PTB
N.D.
N.D.
-0.3
N.D.
-0.8
carbon source
M9+starch
N.D.
N.D.
+0.2
N.D.
-1.3
carbon source
M9+polygalacturonate
N.D.
N.D.
+0.1
N.D.
-1.2
plant
Stem-Norland
N.D.
N.D.
-0.2
N.D.
-0.9
carbon source
M9+glucose+arginine
N.D.
N.D.
+0.1
N.D.
-1.1
plant
Norland
N.D.
N.D.
-0.4
N.D.
-0.6
control
LB
N.D.
N.D.
-0.1
N.D.
-0.9
plant
Atlantic
N.D.
N.D.
+0.3
N.D.
-1.1
control
PDB
N.D.
N.D.
-1.1
N.D.
+0.5
control
PDB
N.D.
N.D.
-0.8
N.D.
+0.3
control
PDB
N.D.
N.D.
-0.4
N.D.
+0.9
control
PDB
N.D.
N.D.
-0.3
N.D.
+1.1
plant
Atlantic
N.D.
N.D.
-0.1
N.D.
+1.2
control
PDB
N.D.
N.D.
-0.3
N.D.
+1.7
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