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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS06435 and DDA3937_RS06440 are separated by 647 nucleotides
DDA3937_RS06440 and DDA3937_RS06445 overlap by 7 nucleotides
DDA3937_RS06445 and DDA3937_RS06450 overlap by 1 nucleotides
DDA3937_RS06450 and DDA3937_RS06455 are separated by 18 nucleotides
DDA3937_RS06435: DDA3937_RS06435 - citrate synthase, at 1,436,746 to 1,438,032
_RS06435
DDA3937_RS06440: DDA3937_RS06440 - succinate dehydrogenase cytochrome b556 subunit, at 1,438,680 to 1,439,069
_RS06440
DDA3937_RS06445: DDA3937_RS06445 - succinate dehydrogenase membrane anchor subunit, at 1,439,063 to 1,439,410
_RS06445
DDA3937_RS06450: DDA3937_RS06450 - succinate dehydrogenase flavoprotein subunit, at 1,439,410 to 1,441,176
_RS06450
DDA3937_RS06455: DDA3937_RS06455 - succinate dehydrogenase iron-sulfur subunit, at 1,441,195 to 1,441,911
_RS06455
Group
Condition
DDA3937
_RS06435
DDA3937
_RS06440
DDA3937
_RS06445
DDA3937
_RS06450
DDA3937
_RS06455
carbon source
M9+polygalacturonate
N.D.
-3.4
-2.7
-2.9
-1.8
carbon source
M9+polygalacturonate
N.D.
-3.5
-3.1
-2.7
-1.2
carbon source
M9+polygalacturonate
N.D.
-3.1
-3.0
-2.9
-0.7
plant
Stem-Norland
N.D.
-1.1
-1.3
-1.7
-2.0
carbon source
M9+starch
N.D.
-1.4
-1.1
-0.8
-1.7
plant
Stem-Norland
N.D.
-1.2
-1.1
-1.3
-1.5
plant
Stem-Atlantic
N.D.
-1.4
-1.4
-1.7
-0.6
plant
Stem-Norland
N.D.
-1.2
-1.2
-1.6
-1.0
carbon source
M9+starch
N.D.
-1.6
-1.2
-0.8
-1.2
plant
Stem-Norland
N.D.
-1.3
-1.5
-1.9
+0.1
carbon source
M9+starch
N.D.
-1.3
-1.2
-1.1
-0.8
plant
Stem-Norland
N.D.
-1.1
-1.1
-1.2
-0.5
plant
Stem-Atlantic
N.D.
-0.9
-0.9
-1.5
-0.0
plant
Stem-Atlantic
N.D.
-1.2
-0.9
-1.1
+0.1
carbon source
M9+glucose
N.D.
+0.6
+1.2
+1.5
-0.7
stress
7.5mM_PTB
N.D.
+0.8
+0.8
+0.8
+0.5
control
LB
N.D.
+0.7
+0.9
+0.7
+0.6
control
PDB
N.D.
+0.5
+1.2
+1.4
-0.1
control
LB
N.D.
+0.6
+0.8
+0.8
+0.9
plant
Upstate
N.D.
+0.5
+0.4
+0.4
+1.8
carbon source
M9+glycerol
N.D.
+0.8
+0.8
+0.7
+0.9
control
PDB
N.D.
+0.4
+1.2
+1.6
-0.0
stress
7.5mM_PTB
N.D.
+0.8
+0.8
+0.9
+0.8
plant
Norland
N.D.
+0.9
+0.6
+0.6
+1.4
control
PDB
N.D.
+0.5
+1.0
+1.4
+0.8
carbon source
M9+glucose
N.D.
+0.6
+1.2
+1.6
+0.5
plant
Norland
N.D.
+1.3
+0.5
+0.8
+1.7
carbon source
M9+glucose+arginine
N.D.
+1.3
+1.7
+2.3
-0.8
carbon source
M9+glucose+arginine
N.D.
+1.2
+1.8
+2.1
+0.7
carbon source
M9+glucose+arginine
N.D.
+1.2
+1.9
+2.3
+0.5
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