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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS06390 and DDA3937_RS06395 are separated by 434 nucleotides
DDA3937_RS06395 and DDA3937_RS06400 are separated by 276 nucleotides
DDA3937_RS06400 and DDA3937_RS06405 are separated by 29 nucleotides
DDA3937_RS06405 and DDA3937_RS06410 are separated by 31 nucleotides
DDA3937_RS06390: DDA3937_RS06390 - K(+)-transporting ATPase subunit F, at 1,429,260 to 1,429,349
_RS06390
DDA3937_RS06395: DDA3937_RS06395 - YbfA family protein, at 1,429,784 to 1,429,990
_RS06395
DDA3937_RS06400: DDA3937_RS06400 - DUF1722 domain-containing protein, at 1,430,267 to 1,431,226
_RS06400
DDA3937_RS06405: DDA3937_RS06405 - deoxyribodipyrimidine photo-lyase, at 1,431,256 to 1,432,686
_RS06405
DDA3937_RS06410: DDA3937_RS06410 - type 2 GTP cyclohydrolase I, at 1,432,718 to 1,433,461
_RS06410
Group
Condition
DDA3937
_RS06390
DDA3937
_RS06395
DDA3937
_RS06400
DDA3937
_RS06405
DDA3937
_RS06410
carbon source
M9+starch
-0.2
-0.4
-0.4
-0.2
-0.2
carbon source
M9+glucose
-0.2
-0.6
-0.1
+0.1
-0.5
plant
Atlantic
+0.0
-0.4
-0.1
-0.1
-0.7
plant
Upstate
-0.4
-0.3
-0.3
-0.2
+0.1
carbon source
M9+glycerol
+0.1
-0.9
-0.1
+0.1
+0.0
carbon source
M9+glucose
+0.1
-0.3
+0.0
-0.0
-0.5
carbon source
M9+glycerol
-0.2
+0.2
+0.1
+0.0
-0.8
plant
Atlantic
+0.4
+0.1
-0.4
-0.1
-0.5
plant
Upstate
-0.6
+0.4
+0.1
-0.1
-0.3
plant
Atlantic
-0.2
-0.5
+0.5
+0.3
-0.2
carbon source
M9+glucose+arginine
+0.2
-0.3
-0.1
+0.4
-0.3
plant
Upstate
+0.5
-0.1
-0.0
+0.2
-0.6
control
PDB
-0.2
+0.5
-0.4
+0.2
+0.1
plant
Stem-Norland
-0.4
-0.1
+0.3
+0.4
+0.1
carbon source
M9+glycerol
+0.5
-0.1
+0.2
-0.0
-0.2
carbon source
M9+glycerol
+0.2
+0.3
+0.2
-0.0
-0.3
plant
Stem-Norland
-0.6
-0.1
+0.4
+0.1
+0.6
plant
Stem-Norland
-0.6
+1.0
+0.5
+0.0
-0.5
plant
Stem-Atlantic
+0.3
+0.5
+0.4
-0.3
-0.4
plant
Stem-Norland
-0.4
+0.3
+0.4
+0.0
+0.1
control
PDB
+0.3
-0.2
-0.1
+0.4
+0.1
control
PDB
-0.2
+0.4
+0.4
+0.2
-0.3
plant
Stem-Atlantic
-0.4
+0.1
+0.2
+0.4
+0.2
control
PDB
+0.5
-0.1
-0.3
+0.1
+0.4
plant
Norland
+0.0
-0.3
+0.1
+0.3
+0.5
plant
Atlantic
+0.8
+0.4
+0.0
-0.0
-0.3
plant
Norland
-0.2
+1.0
-0.2
+0.7
-0.3
plant
Stem-Norland
+0.8
+0.6
+0.2
-0.2
-0.2
plant
Stem-Atlantic
-0.0
+0.4
+0.3
+0.3
+0.3
plant
Stem-Atlantic
+0.5
+0.3
+0.2
+0.3
+0.2
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