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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS05940 and DDA3937_RS05945 are separated by 139 nucleotides
DDA3937_RS05945 and DDA3937_RS05950 are separated by 57 nucleotides
DDA3937_RS05950 and DDA3937_RS05955 are separated by 62 nucleotides
DDA3937_RS05955 and DDA3937_RS05960 are separated by 212 nucleotides
DDA3937_RS05940: DDA3937_RS05940 - membrane protein, at 1,337,792 to 1,338,337
_RS05940
DDA3937_RS05945: DDA3937_RS05945 - nicotinamide mononucleotide deamidase-related protein YfaY, at 1,338,477 to 1,339,670
_RS05945
DDA3937_RS05950: DDA3937_RS05950 - co-chaperone YbbN, at 1,339,728 to 1,340,588
_RS05950
DDA3937_RS05955: DDA3937_RS05955 - SDR family oxidoreductase, at 1,340,651 to 1,341,427
_RS05955
DDA3937_RS05960: DDA3937_RS05960 - multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1, at 1,341,640 to 1,342,281
_RS05960
Group
Condition
DDA3937
_RS05940
DDA3937
_RS05945
DDA3937
_RS05950
DDA3937
_RS05955
DDA3937
_RS05960
control
PDB
+0.2
-0.4
+0.0
-2.1
-0.1
control
PDB
-0.2
-0.3
-0.1
-1.6
+0.3
carbon source
M9+glycerol
-0.1
-0.4
-0.7
-1.1
+0.6
control
PDB
-0.2
-0.1
+0.2
-1.0
-0.3
plant
Upstate
-0.2
-0.4
-0.3
-0.4
+0.1
control
PDB
-0.7
+0.7
+0.1
-1.0
-0.3
plant
Stem-Norland
-0.3
-0.8
+0.3
-0.6
+0.4
plant
Norland
+0.0
-0.7
-0.0
-0.8
+0.5
plant
Stem-Norland
+0.4
-0.3
+0.2
-0.6
-0.7
plant
Upstate
+0.2
-0.6
-0.1
-0.6
+0.3
plant
Upstate
-0.1
-0.4
-0.2
-0.3
+0.3
carbon source
M9+glycerol
+0.2
+0.0
-0.5
-0.4
+0.3
plant
Atlantic
-0.3
-0.5
+0.2
-0.1
+0.4
plant
Atlantic
+0.7
+0.0
+0.2
-0.8
-0.1
control
PDB
+0.6
+0.0
+0.2
-0.6
+0.0
plant
Norland
-0.1
-0.6
+0.4
-0.1
+0.6
carbon source
M9+glucose+arginine
-0.3
+0.3
+0.1
-0.2
+0.3
plant
Atlantic
+0.3
-0.3
+0.3
-0.3
+0.2
carbon source
M9+glycerol
+0.1
+0.3
-0.2
-0.2
+0.4
control
LB
-0.1
-0.0
+0.2
-0.3
+0.6
carbon source
M9+starch
+0.1
+0.3
+0.3
-0.2
+0.5
plant
Stem-Norland
-0.4
+0.6
-0.1
+0.5
+0.4
plant
Stem-Atlantic
-0.3
+0.6
+0.2
+0.1
+0.5
carbon source
M9+sucrose
+0.1
+0.3
+0.2
+0.2
+0.4
carbon source
M9+starch
+0.5
+0.4
+0.1
-0.2
+0.3
plant
Stem-Atlantic
-0.4
+0.5
+0.0
+0.8
+0.2
carbon source
M9+glucose
-0.1
+0.1
+0.4
+0.4
+0.5
plant
Stem-Atlantic
-0.2
+1.1
+0.1
+0.4
-0.2
carbon source
M9+glucose+arginine
+0.1
+0.2
+0.4
+0.5
+0.1
plant
Norland
+0.6
+1.8
-0.3
-0.6
+0.4
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