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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS05660 and DDA3937_RS05665 are separated by 138 nucleotides
DDA3937_RS05665 and DDA3937_RS05670 are separated by 113 nucleotides
DDA3937_RS05670 and DDA3937_RS05675 are separated by 126 nucleotides
DDA3937_RS05675 and DDA3937_RS05680 are separated by 129 nucleotides
DDA3937_RS05660: DDA3937_RS05660 - peptidylprolyl isomerase, at 1,264,903 to 1,266,783
_RS05660
DDA3937_RS05665: DDA3937_RS05665 - helix-hairpin-helix domain-containing protein, at 1,266,922 to 1,267,296
_RS05665
DDA3937_RS05670: DDA3937_RS05670 - 7-cyano-7-deazaguanine synthase QueC, at 1,267,410 to 1,268,105
_RS05670
DDA3937_RS05675: DDA3937_RS05675 - PLP-dependent cysteine synthase family protein, at 1,268,232 to 1,269,284
_RS05675
DDA3937_RS05680: DDA3937_RS05680 - Lrp/AsnC family transcriptional regulator, at 1,269,414 to 1,269,875
_RS05680
Group
Condition
DDA3937
_RS05660
DDA3937
_RS05665
DDA3937
_RS05670
DDA3937
_RS05675
DDA3937
_RS05680
control
PDB
-1.3
-0.2
-3.1
-0.2
+0.3
control
PDB
-1.0
+0.5
-2.1
-0.3
+0.1
control
PDB
-0.8
-1.3
+0.0
+0.3
-0.6
control
PDB
-1.0
-0.2
-1.2
+0.2
-0.2
plant
Stem-Norland
-0.3
-0.1
-1.7
-0.3
+0.2
control
PDB
-1.2
-0.1
-0.9
-0.0
+0.1
control
PDB
-0.9
+0.1
-1.0
-0.0
+0.1
plant
Norland
-0.1
-0.6
-0.9
-0.0
-0.2
plant
Upstate
-0.8
-0.0
-0.3
-0.2
-0.3
plant
Atlantic
-0.4
-0.4
-0.4
-0.0
-0.3
plant
Norland
-0.6
-0.6
-1.0
+0.4
+0.4
carbon source
M9+glucose
+0.6
+0.1
-1.8
+0.0
-0.1
carbon source
M9+glucose+arginine
+0.6
+0.0
-1.5
-0.3
+0.0
carbon source
M9+glucose
+0.4
-0.2
-0.8
-0.3
-0.2
plant
Stem-Norland
-0.3
+0.4
-1.3
+0.1
+0.1
plant
Upstate
-0.8
-0.2
+0.3
-0.0
-0.1
plant
Norland
+0.1
-0.4
-0.2
+0.2
-0.4
plant
Stem-Atlantic
+0.3
+0.2
-1.6
+0.1
+0.3
plant
Upstate
-0.4
+0.4
-0.4
-0.2
-0.1
plant
Upstate
-0.5
+0.2
-0.7
+0.1
+0.3
stress
1.88mM_PTB
-0.4
+0.2
-0.6
+0.1
+0.1
plant
Upstate
-0.6
+0.4
-0.4
+0.0
-0.0
plant
Stem-Norland
-0.6
+0.5
-0.3
-0.0
-0.0
carbon source
M9+glucose+arginine
+0.4
-0.1
-0.8
+0.1
-0.1
carbon source
M9+starch
+0.1
+0.5
-0.8
-0.0
-0.1
carbon source
M9+starch
+0.2
+0.4
-0.9
+0.1
+0.1
plant
Atlantic
-0.8
-0.0
+0.4
+0.2
+0.0
carbon source
M9+sucrose
+0.2
+0.4
-0.6
+0.0
+0.1
plant
Stem-Norland
-0.3
+0.3
+0.2
-0.3
+0.4
carbon source
M9+glucose+arginine
+0.6
+0.3
-0.1
-0.1
-0.3
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