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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS05600 and DDA3937_RS05605 overlap by 1 nucleotides
DDA3937_RS05605 and DDA3937_RS05610 overlap by 11 nucleotides
DDA3937_RS05610 and DDA3937_RS05615 are separated by 20 nucleotides
DDA3937_RS05615 and DDA3937_RS05620 are separated by 462 nucleotides
DDA3937_RS05600: DDA3937_RS05600 - cytochrome o ubiquinol oxidase subunit IV, at 1,250,440 to 1,250,772
_RS05600
DDA3937_RS05605: DDA3937_RS05605 - cytochrome o ubiquinol oxidase subunit III, at 1,250,772 to 1,251,386
_RS05605
DDA3937_RS05610: DDA3937_RS05610 - cytochrome o ubiquinol oxidase subunit I, at 1,251,376 to 1,253,367
_RS05610
DDA3937_RS05615: DDA3937_RS05615 - cytochrome o ubiquinol oxidase subunit II, at 1,253,388 to 1,254,338
_RS05615
DDA3937_RS05620: DDA3937_RS05620 - muropeptide MFS transporter AmpG, at 1,254,801 to 1,256,270
_RS05620
Group
Condition
DDA3937
_RS05600
DDA3937
_RS05605
DDA3937
_RS05610
DDA3937
_RS05615
DDA3937
_RS05620
plant
Stem-Norland
N.D.
N.D.
-0.1
-3.1
-0.3
plant
Stem-Atlantic
N.D.
N.D.
+0.4
-3.3
-0.3
plant
Stem-Norland
N.D.
N.D.
-0.1
-2.4
-0.3
control
PDB
N.D.
N.D.
+0.1
-1.5
-0.7
control
PDB
N.D.
N.D.
-0.1
-1.4
-0.5
carbon source
M9+sucrose
N.D.
N.D.
-0.2
-2.1
+0.2
plant
Atlantic
N.D.
N.D.
+0.1
-1.7
-0.4
carbon source
M9+glucose+arginine
N.D.
N.D.
-0.2
-1.9
+0.2
stress
3.75mM_PTB
N.D.
N.D.
-0.6
-1.0
-0.2
plant
Norland
N.D.
N.D.
-0.9
-0.8
-0.0
plant
Stem-Norland
N.D.
N.D.
-0.2
-1.4
+0.1
control
LB
N.D.
N.D.
-0.4
-1.1
+0.1
plant
Stem-Norland
N.D.
N.D.
-0.1
-1.5
+0.1
plant
Stem-Atlantic
N.D.
N.D.
-0.5
-0.5
-0.3
plant
Stem-Norland
N.D.
N.D.
-0.7
-0.9
+0.3
carbon source
M9+glycerol
N.D.
N.D.
-0.7
-0.1
-0.6
carbon source
M9+glucose
N.D.
N.D.
-0.2
-1.2
+0.2
carbon source
M9+sucrose
N.D.
N.D.
+0.1
-1.2
+0.1
plant
Upstate
N.D.
N.D.
+0.2
-0.9
-0.2
control
PDB
N.D.
N.D.
-0.7
+0.2
-0.4
carbon source
M9+glycerol
N.D.
N.D.
-0.8
+0.5
-0.5
control
PDB
N.D.
N.D.
+0.5
-0.1
-0.7
carbon source
M9+glucose+arginine
N.D.
N.D.
+0.5
-1.2
+0.3
carbon source
M9+glucose+arginine
N.D.
N.D.
+0.2
-0.9
+0.4
plant
Atlantic
N.D.
N.D.
+1.0
-1.2
+0.1
carbon source
M9+glycerol
N.D.
N.D.
-0.8
+0.9
-0.1
control
PDB
N.D.
N.D.
+0.3
+1.3
-0.6
plant
Atlantic
N.D.
N.D.
+0.2
+1.5
+0.0
plant
Norland
N.D.
N.D.
+0.9
+1.0
-0.1
carbon source
M9+glycerol
N.D.
N.D.
+0.1
+3.7
-0.2
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