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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS05400 and DDA3937_RS05405 are separated by 187 nucleotides
DDA3937_RS05405 and DDA3937_RS05410 are separated by 170 nucleotides
DDA3937_RS05410 and DDA3937_RS05415 are separated by 35 nucleotides
DDA3937_RS05415 and DDA3937_RS05420 overlap by 4 nucleotides
DDA3937_RS05400: DDA3937_RS05400 - methyl-accepting chemotaxis protein, at 1,203,088 to 1,204,878
_RS05400
DDA3937_RS05405: DDA3937_RS05405 - recombination-associated protein RdgC, at 1,205,066 to 1,205,977
_RS05405
DDA3937_RS05410: DDA3937_RS05410 - fructokinase, at 1,206,148 to 1,207,059
_RS05410
DDA3937_RS05415: DDA3937_RS05415 - hypothetical protein, at 1,207,095 to 1,210,778
_RS05415
DDA3937_RS05420: DDA3937_RS05420 - exonuclease subunit SbcD, at 1,210,775 to 1,212,007
_RS05420
Group
Condition
DDA3937
_RS05400
DDA3937
_RS05405
DDA3937
_RS05410
DDA3937
_RS05415
DDA3937
_RS05420
plant
Stem-Atlantic
-0.0
-2.4
-0.2
-0.8
-0.7
plant
Stem-Norland
-0.3
-2.3
+0.4
-0.2
-0.8
plant
Stem-Atlantic
-0.0
-1.3
-0.4
-0.5
-0.5
plant
Stem-Norland
+0.2
-1.5
-0.4
-0.4
-0.4
plant
Stem-Norland
+0.1
-2.0
-0.3
+0.0
-0.3
plant
Stem-Atlantic
-0.2
-1.0
+0.2
-0.2
-0.5
plant
Stem-Norland
-0.1
-0.6
+0.2
-0.6
-0.8
plant
Stem-Atlantic
-0.0
-0.7
-0.1
-0.4
-0.5
plant
Norland
-0.2
-1.6
+0.2
+0.4
+0.2
plant
Norland
-0.2
-0.8
+0.3
-0.2
+0.1
plant
Stem-Norland
-0.0
+0.3
-0.2
-0.4
-0.5
plant
Atlantic
-0.1
-0.9
+0.2
+0.2
+0.3
carbon source
M9+glucose+arginine
+0.0
+1.2
-0.4
-0.2
-0.3
plant
Atlantic
+0.0
-0.4
-0.1
+0.7
+0.4
control
PDB
-0.1
+1.4
-0.4
-0.0
-0.1
carbon source
M9+glucose+arginine
+0.0
+1.4
-0.1
-0.1
-0.4
carbon source
M9+glucose+arginine
-0.0
+1.4
-0.2
+0.0
-0.3
carbon source
M9+glucose
+0.0
+1.3
-0.3
-0.0
-0.1
control
PDB
-0.0
+0.9
+0.4
-0.0
-0.2
plant
Upstate
+0.1
-0.2
+0.8
+0.2
+0.2
carbon source
M9+glucose
-0.1
+2.0
-0.3
-0.3
-0.1
control
PDB
+0.1
+0.9
+0.1
-0.0
+0.3
plant
Upstate
+0.2
+0.3
+0.6
+0.1
+0.1
control
PDB
-0.0
+0.7
+0.8
+0.2
+0.1
carbon source
M9+glycerol
-0.1
+0.2
+0.1
+0.9
+0.9
carbon source
M9+glycerol
-0.0
+0.2
-0.1
+1.8
+1.7
carbon source
M9+glycerol
-0.2
-0.3
+0.1
+1.9
+2.2
carbon source
M9+glycerol
-0.0
-0.4
-0.2
+2.3
+2.3
carbon source
M9+glycerol
+0.1
+0.0
+0.3
+2.1
+1.9
carbon source
M9+glycerol
-0.0
+0.4
+0.2
+2.1
+2.1
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DDA3937_RS05410
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