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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS05260 and DDA3937_RS05265 are separated by 207 nucleotides
DDA3937_RS05265 and DDA3937_RS05270 are separated by 10 nucleotides
DDA3937_RS05270 and DDA3937_RS05275 are separated by 101 nucleotides
DDA3937_RS05275 and DDA3937_RS05280 are separated by 54 nucleotides
DDA3937_RS05260: DDA3937_RS05260 - YbhB/YbcL family Raf kinase inhibitor-like protein, at 1,172,175 to 1,172,753
_RS05260
DDA3937_RS05265: DDA3937_RS05265 - ornithine cyclodeaminase family protein, at 1,172,961 to 1,173,887
_RS05265
DDA3937_RS05270: DDA3937_RS05270 - DSD1 family PLP-dependent enzyme, at 1,173,898 to 1,175,043
_RS05270
DDA3937_RS05275: DDA3937_RS05275 - LysR family transcriptional regulator, at 1,175,145 to 1,176,056
_RS05275
DDA3937_RS05280: DDA3937_RS05280 - MFS transporter, at 1,176,111 to 1,177,322
_RS05280
Group
Condition
DDA3937
_RS05260
DDA3937
_RS05265
DDA3937
_RS05270
DDA3937
_RS05275
DDA3937
_RS05280
plant
Stem-Atlantic
-0.2
-0.5
+0.4
-1.0
-0.1
plant
Stem-Atlantic
-0.8
-0.0
-0.1
-0.1
-0.1
plant
Atlantic
-0.7
-0.4
-0.3
+0.2
+0.2
plant
Norland
-0.2
-0.5
+0.4
-0.3
-0.2
plant
Stem-Atlantic
-0.7
+0.1
-0.3
+0.3
+0.1
plant
Upstate
+0.5
-0.3
-0.4
-0.1
-0.1
control
PDB
+0.5
-1.6
+0.3
+0.2
+0.1
plant
Stem-Norland
+0.1
-0.0
-0.8
+0.0
+0.3
carbon source
M9+glucose+arginine
-0.4
+0.1
-0.5
+0.3
+0.1
plant
Atlantic
+0.4
-0.6
-0.1
-0.2
+0.3
carbon source
M9+glycerol
+0.7
-0.1
-0.7
+0.1
-0.1
plant
Upstate
+0.2
-0.6
+0.4
-0.2
+0.1
plant
Stem-Norland
-0.4
+0.3
+0.2
-0.2
+0.0
plant
Stem-Atlantic
-0.4
+0.2
-0.2
+0.4
+0.2
control
PDB
-0.7
+0.5
+0.1
+0.3
+0.0
control
PDB
+0.2
-0.5
+0.8
-0.0
-0.2
carbon source
M9+glucose+arginine
-0.2
-0.2
+0.2
+0.5
-0.1
stress
7.5mM_PTB
+0.4
-0.2
-0.2
+0.4
-0.1
plant
Stem-Norland
-0.3
+0.3
+0.7
-0.2
-0.1
carbon source
M9+glycerol
+1.1
+0.0
-0.2
-0.2
-0.2
carbon source
M9+glucose
-0.0
-0.1
+0.3
+0.5
-0.2
carbon source
M9+glycerol
+0.1
+0.4
+0.9
-0.3
-0.4
control
LB
+0.5
+0.2
+0.2
+0.0
-0.2
plant
Stem-Norland
+0.1
+0.8
-0.4
+0.2
+0.1
control
PDB
+0.1
+0.2
+0.8
-0.3
-0.0
plant
Norland
+1.1
+0.1
-0.1
-0.2
-0.0
plant
Stem-Norland
+0.2
+0.2
+0.5
+0.3
-0.0
control
LB
+0.4
+0.2
+0.4
+0.4
+0.0
plant
Atlantic
+0.8
+0.7
+0.1
-0.2
-0.1
plant
Norland
+1.1
-0.2
+0.4
-0.0
+0.1
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