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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS05200 and DDA3937_RS05205 overlap by 11 nucleotides
DDA3937_RS05205 and DDA3937_RS05210 are separated by 45 nucleotides
DDA3937_RS05210 and DDA3937_RS05215 overlap by 14 nucleotides
DDA3937_RS05215 and DDA3937_RS05220 are separated by 239 nucleotides
DDA3937_RS05200: DDA3937_RS05200 - VOC family protein, at 1,161,872 to 1,162,261
_RS05200
DDA3937_RS05205: DDA3937_RS05205 - tRNA lysidine(34) synthetase TilS, at 1,162,251 to 1,163,579
_RS05205
DDA3937_RS05210: DDA3937_RS05210 - Rho-binding antiterminator, at 1,163,625 to 1,163,885
_RS05210
DDA3937_RS05215: DDA3937_RS05215 - YaeP family protein, at 1,163,872 to 1,164,072
_RS05215
DDA3937_RS05220: DDA3937_RS05220 - YaeQ family protein, at 1,164,312 to 1,164,860
_RS05220
Group
Condition
DDA3937
_RS05200
DDA3937
_RS05205
DDA3937
_RS05210
DDA3937
_RS05215
DDA3937
_RS05220
plant
Atlantic
-1.1
N.D.
-0.4
-0.0
-0.0
plant
Stem-Norland
-1.7
N.D.
+0.0
+0.6
-0.4
plant
Norland
-0.7
N.D.
-0.3
-0.5
+0.1
plant
Norland
-0.6
N.D.
-0.5
-0.3
+0.0
plant
Atlantic
-0.8
N.D.
+0.0
-0.7
+0.2
plant
Atlantic
-0.6
N.D.
-0.4
-0.3
+0.1
plant
Stem-Atlantic
-2.2
N.D.
+1.0
+0.6
-0.3
plant
Norland
+0.1
N.D.
-0.7
-0.4
+0.2
carbon source
M9+starch
-0.6
N.D.
+0.2
-0.5
+0.1
plant
Atlantic
-0.7
N.D.
-0.4
+0.3
-0.0
plant
Stem-Atlantic
-1.3
N.D.
+0.5
+0.1
-0.1
control
PDB
+0.6
N.D.
-0.3
-1.0
+0.2
carbon source
M9+glycerol
-0.3
N.D.
-0.4
+0.5
-0.3
plant
Stem-Norland
-1.2
N.D.
+0.2
+0.6
+0.0
control
PDB
-0.1
N.D.
-0.6
-0.3
+0.7
plant
Norland
-0.4
N.D.
+0.5
-0.5
+0.0
plant
Atlantic
-0.5
N.D.
+0.2
-0.3
+0.4
plant
Stem-Norland
-1.2
N.D.
+0.7
+0.9
-0.6
plant
Stem-Norland
-0.6
N.D.
+0.1
+0.4
+0.3
plant
Upstate
-0.4
N.D.
+0.8
-0.3
+0.1
plant
Stem-Atlantic
-0.8
N.D.
-0.1
+0.6
+0.6
plant
Stem-Atlantic
-0.6
N.D.
+0.6
+0.5
-0.1
plant
Stem-Norland
-0.6
N.D.
-0.2
+0.9
+0.3
control
PDB
+0.7
N.D.
-0.7
+0.1
+0.3
control
PDB
+0.6
N.D.
+0.8
-0.9
+0.1
plant
Stem-Atlantic
-1.2
N.D.
+0.8
+0.7
+0.3
carbon source
M9+glycerol
+0.5
N.D.
+0.9
+0.3
-0.3
control
LB
+0.1
N.D.
+1.0
+1.0
-0.1
control
LB
-0.0
N.D.
+1.2
+1.1
-0.1
control
LB
+0.2
N.D.
+1.4
+0.9
-0.1
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