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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS05025 and DDA3937_RS05030 are separated by 218 nucleotides
DDA3937_RS05030 and DDA3937_RS05035 overlap by 13 nucleotides
DDA3937_RS05035 and DDA3937_RS05040 are separated by 3 nucleotides
DDA3937_RS05040 and DDA3937_RS05045 are separated by 171 nucleotides
DDA3937_RS05025: DDA3937_RS05025 - GNAT family N-acetyltransferase, at 1,124,901 to 1,125,347
_RS05025
DDA3937_RS05030: DDA3937_RS05030 - tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA, at 1,125,566 to 1,126,399
_RS05030
DDA3937_RS05035: DDA3937_RS05035 - cysteine desulfurase sulfur acceptor subunit CsdE, at 1,126,387 to 1,126,830
_RS05035
DDA3937_RS05040: DDA3937_RS05040 - cysteine desulfurase CsdA, at 1,126,834 to 1,128,039
_RS05040
DDA3937_RS05045: DDA3937_RS05045 - YgdI/YgdR family lipoprotein, at 1,128,211 to 1,128,432
_RS05045
Group
Condition
DDA3937
_RS05025
DDA3937
_RS05030
DDA3937
_RS05035
DDA3937
_RS05040
DDA3937
_RS05045
carbon source
M9+glucose+arginine
+0.0
-1.3
-1.4
-0.7
-0.0
carbon source
M9+glucose
-0.1
-0.6
-1.3
-0.6
-0.4
carbon source
M9+glucose
+0.3
-1.2
-1.2
-0.6
-0.2
carbon source
M9+glucose+arginine
+0.1
-0.9
-0.9
-0.8
-0.0
carbon source
M9+glucose
+0.2
-0.5
-0.8
-0.8
-0.2
carbon source
M9+glucose+arginine
-0.1
-0.8
-0.7
-0.6
+0.5
plant
Stem-Atlantic
-0.4
-0.1
-0.6
-0.5
-0.2
carbon source
M9+sucrose
-0.4
-0.3
-0.2
-0.0
-0.6
control
LB
+0.0
-0.3
-0.9
-0.3
+0.2
carbon source
M9+starch
-0.3
-0.3
-0.3
+0.4
-0.4
carbon source
M9+polygalacturonate
-0.2
-0.3
-0.4
+0.3
-0.4
plant
Atlantic
-0.0
+0.5
-0.2
-0.1
-0.9
control
PDB
+0.6
-0.1
+0.7
-0.3
-1.4
plant
Norland
+0.0
+0.2
-0.6
-0.2
+0.4
plant
Stem-Atlantic
-0.4
-0.3
-0.2
-0.2
+0.8
plant
Norland
+0.6
-0.3
-0.3
+0.2
-0.1
plant
Atlantic
-0.5
+0.6
-0.1
-0.2
+0.4
plant
Stem-Norland
-0.7
-0.5
+1.0
+0.1
+0.2
plant
Atlantic
-0.2
+0.6
-0.1
-0.3
+0.4
plant
Norland
+0.3
-0.5
+0.5
-0.2
+0.3
plant
Stem-Atlantic
-0.2
-0.3
+0.2
-0.3
+1.1
plant
Stem-Atlantic
+0.1
-0.4
+0.6
-0.1
+1.0
plant
Stem-Atlantic
-0.3
+0.2
+0.7
+0.3
+0.5
control
PDB
-0.1
+0.2
+0.9
+0.7
+0.1
plant
Stem-Norland
-0.3
+0.4
+1.5
+0.1
+0.1
carbon source
M9+glycerol
+0.1
+0.3
+0.4
+0.5
+0.7
carbon source
M9+glycerol
-0.4
+0.6
+0.7
+0.9
+0.4
carbon source
M9+glycerol
-0.0
+0.3
+1.7
+0.2
-0.0
carbon source
M9+glycerol
-0.4
+0.8
+1.2
+0.6
+0.5
carbon source
M9+glycerol
+0.1
+0.5
+1.4
+0.6
+0.1
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DDA3937_RS05035
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